Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TNFSF9P41273 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TNFSF9P41273 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
TNFSF9P41273 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC21.06■□□□□ 0.96
TNFSF9P41273 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TNFSF9P41273 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TNFSF9P41273 AC011506.1-201ENST00000474329 610 ntBASIC21.06■□□□□ 0.96
TNFSF9P41273 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC21.06■□□□□ 0.96
TNFSF9P41273 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TNFSF9P41273 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC21.06■□□□□ 0.96
TNFSF9P41273 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.06■□□□□ 0.96
TNFSF9P41273 SNX21-213ENST00000614929 587 ntTSL 5 BASIC21.06■□□□□ 0.96
TNFSF9P41273 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC21.06■□□□□ 0.96
TNFSF9P41273 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.06■□□□□ 0.96
TNFSF9P41273 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TNFSF9P41273 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.06■□□□□ 0.96
TNFSF9P41273 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC21.06■□□□□ 0.96
TNFSF9P41273 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
TNFSF9P41273 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.05■□□□□ 0.96
TNFSF9P41273 ANKRD18DP-204ENST00000455355 1975 ntBASIC21.05■□□□□ 0.96
TNFSF9P41273 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
TNFSF9P41273 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.05■□□□□ 0.96
TNFSF9P41273 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
TNFSF9P41273 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
TNFSF9P41273 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TNFSF9P41273 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC21.05■□□□□ 0.96
TNFSF9P41273 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TNFSF9P41273 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC21.05■□□□□ 0.96
TNFSF9P41273 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.05■□□□□ 0.96
TNFSF9P41273 AC116562.2-201ENST00000507042 360 ntBASIC21.05■□□□□ 0.96
TNFSF9P41273 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.05■□□□□ 0.96
TNFSF9P41273 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC21.05■□□□□ 0.96
TNFSF9P41273 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.05■□□□□ 0.96
TNFSF9P41273 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC21.05■□□□□ 0.96
TNFSF9P41273 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC21.05■□□□□ 0.96
TNFSF9P41273 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC21.05■□□□□ 0.96
TNFSF9P41273 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21.05■□□□□ 0.96
TNFSF9P41273 AC131212.4-201ENST00000623606 975 ntBASIC21.05■□□□□ 0.96
TNFSF9P41273 DECR2-212ENST00000627716 352 ntTSL 2 BASIC21.05■□□□□ 0.96
TNFSF9P41273 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC21.05■□□□□ 0.96
TNFSF9P41273 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TNFSF9P41273 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
TNFSF9P41273 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
TNFSF9P41273 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TNFSF9P41273 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
TNFSF9P41273 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFSF9P41273 Z85996.1-201ENST00000494644 937 ntBASIC21.04■□□□□ 0.96
TNFSF9P41273 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
TNFSF9P41273 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
TNFSF9P41273 AL160286.2-201ENST00000567150 934 ntBASIC21.04■□□□□ 0.96
TNFSF9P41273 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.04■□□□□ 0.96
TNFSF9P41273 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.04■□□□□ 0.96
TNFSF9P41273 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFSF9P41273 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFSF9P41273 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFSF9P41273 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFSF9P41273 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TNFSF9P41273 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFSF9P41273 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFSF9P41273 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
TNFSF9P41273 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFSF9P41273 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC21.04■□□□□ 0.96
TNFSF9P41273 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TNFSF9P41273 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TNFSF9P41273 AC104417.2-201ENST00000562989 1793 ntBASIC21.03■□□□□ 0.96
TNFSF9P41273 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TNFSF9P41273 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TNFSF9P41273 AC008040.2-201ENST00000461049 708 ntBASIC21.03■□□□□ 0.96
TNFSF9P41273 B3GAT3P1-201ENST00000471720 806 ntBASIC21.03■□□□□ 0.96
TNFSF9P41273 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.03■□□□□ 0.96
TNFSF9P41273 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC21.03■□□□□ 0.96
TNFSF9P41273 MIR6786-201ENST00000616843 113 ntBASIC21.03■□□□□ 0.96
TNFSF9P41273 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TNFSF9P41273 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
TNFSF9P41273 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TNFSF9P41273 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.02■□□□□ 0.96
TNFSF9P41273 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TNFSF9P41273 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TNFSF9P41273 ZNF815P-204ENST00000434898 1737 ntBASIC21.02■□□□□ 0.96
TNFSF9P41273 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC21.02■□□□□ 0.96
TNFSF9P41273 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC21.02■□□□□ 0.96
TNFSF9P41273 RBM17P1-201ENST00000453646 1190 ntBASIC21.02■□□□□ 0.96
TNFSF9P41273 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC21.02■□□□□ 0.96
TNFSF9P41273 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC21.02■□□□□ 0.96
TNFSF9P41273 AC026271.3-201ENST00000571884 352 ntBASIC21.02■□□□□ 0.96
TNFSF9P41273 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TNFSF9P41273 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.02■□□□□ 0.96
TNFSF9P41273 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
TNFSF9P41273 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
TNFSF9P41273 RCC2P6-201ENST00000526625 1557 ntBASIC21.02■□□□□ 0.95
TNFSF9P41273 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
TNFSF9P41273 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TNFSF9P41273 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.01■□□□□ 0.95
TNFSF9P41273 AC079598.2-202ENST00000546624 1451 ntBASIC21.01■□□□□ 0.95
TNFSF9P41273 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
TNFSF9P41273 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
TNFSF9P41273 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TNFSF9P41273 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
TNFSF9P41273 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TNFSF9P41273 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms