Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.53■□□□□ 0.56
MSX2P35548 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSX2P35548 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.53■□□□□ 0.56
MSX2P35548 PHGDH-210ENST00000641115 1638 ntBASIC18.53■□□□□ 0.56
MSX2P35548 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.53■□□□□ 0.56
MSX2P35548 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
MSX2P35548 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSX2P35548 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSX2P35548 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSX2P35548 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.53■□□□□ 0.56
MSX2P35548 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
MSX2P35548 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSX2P35548 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSX2P35548 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSX2P35548 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSX2P35548 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18.53■□□□□ 0.56
MSX2P35548 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.53■□□□□ 0.56
MSX2P35548 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.53■□□□□ 0.56
MSX2P35548 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.53■□□□□ 0.56
MSX2P35548 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
MSX2P35548 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
MSX2P35548 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
MSX2P35548 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
MSX2P35548 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
MSX2P35548 FP475955.4-201ENST00000623131 1990 ntBASIC18.53■□□□□ 0.56
MSX2P35548 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
MSX2P35548 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
MSX2P35548 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSX2P35548 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
MSX2P35548 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.53■□□□□ 0.56
MSX2P35548 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
MSX2P35548 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
MSX2P35548 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSX2P35548 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.52■□□□□ 0.56
MSX2P35548 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
MSX2P35548 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSX2P35548 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
MSX2P35548 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.52■□□□□ 0.56
MSX2P35548 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
MSX2P35548 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSX2P35548 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.52■□□□□ 0.56
MSX2P35548 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
MSX2P35548 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSX2P35548 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
MSX2P35548 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSX2P35548 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
MSX2P35548 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
MSX2P35548 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
MSX2P35548 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
MSX2P35548 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
MSX2P35548 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
MSX2P35548 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.52■□□□□ 0.55
MSX2P35548 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
MSX2P35548 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
MSX2P35548 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.51■□□□□ 0.55
MSX2P35548 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 AC141586.3-201ENST00000562166 1838 ntBASIC18.51■□□□□ 0.55
MSX2P35548 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSX2P35548 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
MSX2P35548 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.5■□□□□ 0.55
MSX2P35548 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.5■□□□□ 0.55
MSX2P35548 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
MSX2P35548 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
MSX2P35548 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
MSX2P35548 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.5■□□□□ 0.55
MSX2P35548 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSX2P35548 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms