Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.7■□□□□ 0.58
COL5A1P20908 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.7■□□□□ 0.58
COL5A1P20908 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A1P20908 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A1P20908 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A1P20908 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.7■□□□□ 0.58
COL5A1P20908 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A1P20908 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
COL5A1P20908 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A1P20908 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A1P20908 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A1P20908 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL5A1P20908 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.7■□□□□ 0.58
COL5A1P20908 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.7■□□□□ 0.58
COL5A1P20908 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.7■□□□□ 0.58
COL5A1P20908 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.7■□□□□ 0.58
COL5A1P20908 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.7■□□□□ 0.58
COL5A1P20908 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
COL5A1P20908 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
COL5A1P20908 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A1P20908 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.69■□□□□ 0.58
COL5A1P20908 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.69■□□□□ 0.58
COL5A1P20908 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
COL5A1P20908 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A1P20908 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.69■□□□□ 0.58
COL5A1P20908 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.69■□□□□ 0.58
COL5A1P20908 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.69■□□□□ 0.58
COL5A1P20908 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC18.69■□□□□ 0.58
COL5A1P20908 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.69■□□□□ 0.58
COL5A1P20908 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.69■□□□□ 0.58
COL5A1P20908 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A1P20908 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
COL5A1P20908 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.69■□□□□ 0.58
COL5A1P20908 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A1P20908 FEM1AP1-201ENST00000431297 1995 ntBASIC18.69■□□□□ 0.58
COL5A1P20908 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A1P20908 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A1P20908 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL5A1P20908 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
COL5A1P20908 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.68■□□□□ 0.58
COL5A1P20908 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A1P20908 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A1P20908 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
COL5A1P20908 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.68■□□□□ 0.58
COL5A1P20908 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.68■□□□□ 0.58
COL5A1P20908 PRSS44-201ENST00000515154 1146 ntBASIC18.68■□□□□ 0.58
COL5A1P20908 VENTXP5-201ENST00000523979 775 ntBASIC18.68■□□□□ 0.58
COL5A1P20908 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.68■□□□□ 0.58
COL5A1P20908 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.68■□□□□ 0.58
COL5A1P20908 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A1P20908 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.68■□□□□ 0.58
COL5A1P20908 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.68■□□□□ 0.58
COL5A1P20908 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.68■□□□□ 0.58
COL5A1P20908 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A1P20908 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A1P20908 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A1P20908 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A1P20908 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL5A1P20908 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.67■□□□□ 0.58
COL5A1P20908 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A1P20908 AL136038.3-201ENST00000561909 1096 ntBASIC18.67■□□□□ 0.58
COL5A1P20908 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A1P20908 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
COL5A1P20908 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A1P20908 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A1P20908 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A1P20908 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.67■□□□□ 0.58
COL5A1P20908 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A1P20908 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A1P20908 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A1P20908 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
COL5A1P20908 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A1P20908 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A1P20908 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A1P20908 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.67■□□□□ 0.58
COL5A1P20908 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL5A1P20908 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.67■□□□□ 0.58
COL5A1P20908 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.67■□□□□ 0.58
COL5A1P20908 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.67■□□□□ 0.58
COL5A1P20908 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL5A1P20908 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL5A1P20908 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.66■□□□□ 0.58
COL5A1P20908 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL5A1P20908 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.66■□□□□ 0.58
COL5A1P20908 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.66■□□□□ 0.58
COL5A1P20908 CLEC4GP1-201ENST00000596555 870 ntBASIC18.66■□□□□ 0.58
COL5A1P20908 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.66■□□□□ 0.58
COL5A1P20908 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL5A1P20908 KRT8P45-201ENST00000414328 1447 ntBASIC18.66■□□□□ 0.58
COL5A1P20908 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.66■□□□□ 0.58
COL5A1P20908 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.66■□□□□ 0.58
COL5A1P20908 AC020907.5-201ENST00000624372 1936 ntBASIC18.66■□□□□ 0.58
COL5A1P20908 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.66■□□□□ 0.58
COL5A1P20908 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL5A1P20908 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL5A1P20908 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A1P20908 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A1P20908 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A1P20908 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL5A1P20908 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms