Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.4■□□□□ 0.86
PDGFRAP16234 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
PDGFRAP16234 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
PDGFRAP16234 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.39■□□□□ 0.86
PDGFRAP16234 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.39■□□□□ 0.86
PDGFRAP16234 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.39■□□□□ 0.86
PDGFRAP16234 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PDGFRAP16234 Z82202.1-201ENST00000623446 1880 ntBASIC20.39■□□□□ 0.86
PDGFRAP16234 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
PDGFRAP16234 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PDGFRAP16234 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PDGFRAP16234 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PDGFRAP16234 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
PDGFRAP16234 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
PDGFRAP16234 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
PDGFRAP16234 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PDGFRAP16234 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
PDGFRAP16234 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.85
PDGFRAP16234 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PDGFRAP16234 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
PDGFRAP16234 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.39■□□□□ 0.85
PDGFRAP16234 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.39■□□□□ 0.85
PDGFRAP16234 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PDGFRAP16234 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PDGFRAP16234 KRASP1-201ENST00000407852 552 ntBASIC20.39■□□□□ 0.85
PDGFRAP16234 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
PDGFRAP16234 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.39■□□□□ 0.85
PDGFRAP16234 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.39■□□□□ 0.85
PDGFRAP16234 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
PDGFRAP16234 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.39■□□□□ 0.85
PDGFRAP16234 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.39■□□□□ 0.85
PDGFRAP16234 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.39■□□□□ 0.85
PDGFRAP16234 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.39■□□□□ 0.85
PDGFRAP16234 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.39■□□□□ 0.85
PDGFRAP16234 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
PDGFRAP16234 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.39■□□□□ 0.85
PDGFRAP16234 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PDGFRAP16234 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PDGFRAP16234 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.38■□□□□ 0.85
PDGFRAP16234 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PDGFRAP16234 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
PDGFRAP16234 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
PDGFRAP16234 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.38■□□□□ 0.85
PDGFRAP16234 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PDGFRAP16234 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.38■□□□□ 0.85
PDGFRAP16234 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.38■□□□□ 0.85
PDGFRAP16234 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
PDGFRAP16234 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PDGFRAP16234 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.38■□□□□ 0.85
PDGFRAP16234 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.38■□□□□ 0.85
PDGFRAP16234 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PDGFRAP16234 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
PDGFRAP16234 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
PDGFRAP16234 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.38■□□□□ 0.85
PDGFRAP16234 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.38■□□□□ 0.85
PDGFRAP16234 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.38■□□□□ 0.85
PDGFRAP16234 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PDGFRAP16234 AC093827.2-201ENST00000512654 315 ntBASIC20.38■□□□□ 0.85
PDGFRAP16234 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.38■□□□□ 0.85
PDGFRAP16234 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
PDGFRAP16234 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.38■□□□□ 0.85
PDGFRAP16234 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.38■□□□□ 0.85
PDGFRAP16234 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.38■□□□□ 0.85
PDGFRAP16234 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PDGFRAP16234 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PDGFRAP16234 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PDGFRAP16234 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
PDGFRAP16234 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PDGFRAP16234 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PDGFRAP16234 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PDGFRAP16234 AC005332.7-201ENST00000614046 2005 ntBASIC20.37■□□□□ 0.85
PDGFRAP16234 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.37■□□□□ 0.85
PDGFRAP16234 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.37■□□□□ 0.85
PDGFRAP16234 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
PDGFRAP16234 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PDGFRAP16234 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.37■□□□□ 0.85
PDGFRAP16234 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
PDGFRAP16234 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.37■□□□□ 0.85
PDGFRAP16234 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.37■□□□□ 0.85
PDGFRAP16234 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.37■□□□□ 0.85
PDGFRAP16234 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.37■□□□□ 0.85
PDGFRAP16234 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PDGFRAP16234 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.37■□□□□ 0.85
PDGFRAP16234 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.37■□□□□ 0.85
PDGFRAP16234 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.37■□□□□ 0.85
PDGFRAP16234 AC004264.1-201ENST00000608354 794 ntBASIC20.37■□□□□ 0.85
PDGFRAP16234 AC124016.1-201ENST00000609552 612 ntBASIC20.37■□□□□ 0.85
PDGFRAP16234 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
PDGFRAP16234 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PDGFRAP16234 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
PDGFRAP16234 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PDGFRAP16234 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.37■□□□□ 0.85
PDGFRAP16234 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
PDGFRAP16234 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
PDGFRAP16234 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
PDGFRAP16234 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PDGFRAP16234 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
PDGFRAP16234 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PDGFRAP16234 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PDGFRAP16234 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms