Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.98■□□□□ 0.63
SIX3O95343 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX3O95343 PNMA6B-201ENST00000538162 1200 ntBASIC18.98■□□□□ 0.63
SIX3O95343 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.98■□□□□ 0.63
SIX3O95343 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.98■□□□□ 0.63
SIX3O95343 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX3O95343 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SIX3O95343 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SIX3O95343 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.98■□□□□ 0.63
SIX3O95343 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX3O95343 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX3O95343 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
SIX3O95343 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX3O95343 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
SIX3O95343 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX3O95343 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX3O95343 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SIX3O95343 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SIX3O95343 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX3O95343 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX3O95343 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SIX3O95343 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SIX3O95343 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.97■□□□□ 0.63
SIX3O95343 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.97■□□□□ 0.63
SIX3O95343 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX3O95343 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.97■□□□□ 0.63
SIX3O95343 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.97■□□□□ 0.63
SIX3O95343 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.97■□□□□ 0.63
SIX3O95343 AC060766.5-201ENST00000590539 871 ntBASIC18.97■□□□□ 0.63
SIX3O95343 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
SIX3O95343 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
SIX3O95343 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SIX3O95343 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX3O95343 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.97■□□□□ 0.63
SIX3O95343 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX3O95343 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX3O95343 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
SIX3O95343 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.97■□□□□ 0.63
SIX3O95343 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SIX3O95343 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SIX3O95343 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX3O95343 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
SIX3O95343 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SIX3O95343 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX3O95343 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.96■□□□□ 0.63
SIX3O95343 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX3O95343 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.96■□□□□ 0.63
SIX3O95343 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SIX3O95343 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX3O95343 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.96■□□□□ 0.63
SIX3O95343 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.96■□□□□ 0.63
SIX3O95343 AL109923.1-201ENST00000618799 583 ntBASIC18.96■□□□□ 0.63
SIX3O95343 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX3O95343 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.96■□□□□ 0.63
SIX3O95343 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.96■□□□□ 0.63
SIX3O95343 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
SIX3O95343 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.96■□□□□ 0.63
SIX3O95343 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX3O95343 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SIX3O95343 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
SIX3O95343 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SIX3O95343 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX3O95343 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX3O95343 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
SIX3O95343 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.95■□□□□ 0.62
SIX3O95343 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.95■□□□□ 0.62
SIX3O95343 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.95■□□□□ 0.62
SIX3O95343 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX3O95343 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX3O95343 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SIX3O95343 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX3O95343 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
SIX3O95343 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.95■□□□□ 0.62
SIX3O95343 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.95■□□□□ 0.62
SIX3O95343 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.95■□□□□ 0.62
SIX3O95343 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX3O95343 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SIX3O95343 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX3O95343 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX3O95343 AP006587.1-201ENST00000534129 1502 ntBASIC18.95■□□□□ 0.62
SIX3O95343 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX3O95343 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SIX3O95343 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SIX3O95343 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SIX3O95343 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SIX3O95343 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SIX3O95343 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SIX3O95343 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SIX3O95343 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.94■□□□□ 0.62
SIX3O95343 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SIX3O95343 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SIX3O95343 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SIX3O95343 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.94■□□□□ 0.62
SIX3O95343 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.94■□□□□ 0.62
SIX3O95343 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SIX3O95343 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.94■□□□□ 0.62
SIX3O95343 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
SIX3O95343 AL121906.2-201ENST00000621597 723 ntBASIC18.94■□□□□ 0.62
SIX3O95343 AC141586.3-201ENST00000562166 1838 ntBASIC18.94■□□□□ 0.62
SIX3O95343 SDHAP1-207ENST00000440850 2000 ntBASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms