Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLDN3O15551 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.24■□□□□ 0.99
CLDN3O15551 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLDN3O15551 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLDN3O15551 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLDN3O15551 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
CLDN3O15551 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CLDN3O15551 KRT16P1-201ENST00000399124 1418 ntBASIC21.24■□□□□ 0.99
CLDN3O15551 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLDN3O15551 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLDN3O15551 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLDN3O15551 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
CLDN3O15551 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CLDN3O15551 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC21.24■□□□□ 0.99
CLDN3O15551 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC21.24■□□□□ 0.99
CLDN3O15551 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC21.24■□□□□ 0.99
CLDN3O15551 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC21.24■□□□□ 0.99
CLDN3O15551 HLA-A-209ENST00000638375 975 ntBASIC21.24■□□□□ 0.99
CLDN3O15551 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC21.24■□□□□ 0.99
CLDN3O15551 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
CLDN3O15551 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC21.24■□□□□ 0.99
CLDN3O15551 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLDN3O15551 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC21.24■□□□□ 0.99
CLDN3O15551 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
CLDN3O15551 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLDN3O15551 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLDN3O15551 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLDN3O15551 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.24■□□□□ 0.99
CLDN3O15551 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLDN3O15551 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CLDN3O15551 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CLDN3O15551 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CLDN3O15551 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLDN3O15551 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.23■□□□□ 0.99
CLDN3O15551 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.23■□□□□ 0.99
CLDN3O15551 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLDN3O15551 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLDN3O15551 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLDN3O15551 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.23■□□□□ 0.99
CLDN3O15551 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLDN3O15551 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC21.23■□□□□ 0.99
CLDN3O15551 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
CLDN3O15551 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CLDN3O15551 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLDN3O15551 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CLDN3O15551 MIR4785-201ENST00000585005 73 ntBASIC21.23■□□□□ 0.99
CLDN3O15551 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLDN3O15551 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
CLDN3O15551 KRT17P2-201ENST00000300992 1314 ntBASIC21.23■□□□□ 0.99
CLDN3O15551 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.23■□□□□ 0.99
CLDN3O15551 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLDN3O15551 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CLDN3O15551 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CLDN3O15551 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLDN3O15551 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLDN3O15551 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
CLDN3O15551 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLDN3O15551 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
CLDN3O15551 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLDN3O15551 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLDN3O15551 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC21.22■□□□□ 0.99
CLDN3O15551 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
CLDN3O15551 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC21.22■□□□□ 0.99
CLDN3O15551 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLDN3O15551 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLDN3O15551 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLDN3O15551 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.22■□□□□ 0.99
CLDN3O15551 AC125437.2-201ENST00000625180 2167 ntBASIC21.21■□□□□ 0.99
CLDN3O15551 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
CLDN3O15551 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
CLDN3O15551 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLDN3O15551 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLDN3O15551 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLDN3O15551 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
CLDN3O15551 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CLDN3O15551 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC21.21■□□□□ 0.99
CLDN3O15551 AL355355.2-201ENST00000442321 338 ntBASIC21.21■□□□□ 0.99
CLDN3O15551 DHDH-203ENST00000522614 776 ntTSL 5 BASIC21.21■□□□□ 0.99
CLDN3O15551 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.21■□□□□ 0.99
CLDN3O15551 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
CLDN3O15551 AC026471.5-201ENST00000615068 467 ntBASIC21.21■□□□□ 0.99
CLDN3O15551 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLDN3O15551 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLDN3O15551 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CLDN3O15551 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CLDN3O15551 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC21.21■□□□□ 0.99
CLDN3O15551 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.99
CLDN3O15551 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLDN3O15551 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLDN3O15551 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC21.2■□□□□ 0.98
CLDN3O15551 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CLDN3O15551 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLDN3O15551 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLDN3O15551 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC21.2■□□□□ 0.98
CLDN3O15551 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC21.2■□□□□ 0.98
CLDN3O15551 PPP1R14BP5-201ENST00000440334 435 ntBASIC21.2■□□□□ 0.98
CLDN3O15551 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC21.2■□□□□ 0.98
CLDN3O15551 AC131212.4-201ENST00000623606 975 ntBASIC21.2■□□□□ 0.98
CLDN3O15551 AL031985.4-201ENST00000642138 673 ntBASIC21.2■□□□□ 0.98
CLDN3O15551 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms