Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC188H7C350 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CCDC188H7C350 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC188H7C350 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC188H7C350 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC188H7C350 AC090164.3-201ENST00000610780 2143 ntBASIC20.2■□□□□ 0.82
CCDC188H7C350 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
CCDC188H7C350 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC188H7C350 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC188H7C350 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC188H7C350 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC188H7C350 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC188H7C350 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC188H7C350 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC188H7C350 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC188H7C350 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC188H7C350 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC188H7C350 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CCDC188H7C350 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC188H7C350 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC188H7C350 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.19■□□□□ 0.82
CCDC188H7C350 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC188H7C350 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC188H7C350 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC188H7C350 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC188H7C350 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC188H7C350 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CCDC188H7C350 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.19■□□□□ 0.82
CCDC188H7C350 DUX4L16-201ENST00000555130 1264 ntBASIC20.19■□□□□ 0.82
CCDC188H7C350 TFP1-202ENST00000475455 1573 ntBASIC20.19■□□□□ 0.82
CCDC188H7C350 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.19■□□□□ 0.82
CCDC188H7C350 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC188H7C350 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC188H7C350 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.19■□□□□ 0.82
CCDC188H7C350 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC188H7C350 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CCDC188H7C350 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC188H7C350 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.19■□□□□ 0.82
CCDC188H7C350 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC188H7C350 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC188H7C350 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC188H7C350 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC188H7C350 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CCDC188H7C350 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
CCDC188H7C350 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC188H7C350 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CCDC188H7C350 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC188H7C350 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC188H7C350 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC188H7C350 AL390961.4-201ENST00000623958 2535 ntBASIC20.18■□□□□ 0.82
CCDC188H7C350 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CCDC188H7C350 WIZP1-201ENST00000531444 2299 ntBASIC20.18■□□□□ 0.82
CCDC188H7C350 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CCDC188H7C350 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CCDC188H7C350 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC188H7C350 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
CCDC188H7C350 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC188H7C350 CYP2T1P-201ENST00000432607 1285 ntBASIC20.18■□□□□ 0.82
CCDC188H7C350 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC188H7C350 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.18■□□□□ 0.82
CCDC188H7C350 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.18■□□□□ 0.82
CCDC188H7C350 AC008694.1-202ENST00000636953 945 ntBASIC20.18■□□□□ 0.82
CCDC188H7C350 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC188H7C350 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC188H7C350 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC188H7C350 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CCDC188H7C350 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC188H7C350 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC188H7C350 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC188H7C350 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC188H7C350 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC188H7C350 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.18■□□□□ 0.82
CCDC188H7C350 COMP-202ENST00000425807 2292 ntTSL 2 BASIC20.18■□□□□ 0.82
CCDC188H7C350 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CCDC188H7C350 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC188H7C350 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC188H7C350 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC188H7C350 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC188H7C350 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC188H7C350 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
CCDC188H7C350 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC188H7C350 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
CCDC188H7C350 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.17■□□□□ 0.82
CCDC188H7C350 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC188H7C350 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC188H7C350 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.17■□□□□ 0.82
CCDC188H7C350 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC188H7C350 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CCDC188H7C350 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC188H7C350 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CCDC188H7C350 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC188H7C350 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC188H7C350 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC188H7C350 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC188H7C350 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC188H7C350 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC188H7C350 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC188H7C350 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC188H7C350 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC188H7C350 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms