Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 RER1-204ENST00000378518 522 ntTSL 3 BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 GGT1-206ENST00000404223 952 ntTSL 2 BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 AL121832.2-201ENST00000610979 668 ntBASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 WT1-AS_3.1-201ENST00000613262 234 ntBASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TRAV3A0A0B4J244 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 AC073210.2-201ENST00000430369 194 ntBASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 RPS2P52-201ENST00000469610 820 ntBASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 ZNF815P-204ENST00000434898 1737 ntBASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRAV3A0A0B4J244 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 MIR935-201ENST00000401179 91 ntBASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 AC006970.2-201ENST00000450065 779 ntBASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 AC091874.3-201ENST00000512672 1195 ntBASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 BET1L-207ENST00000529614 560 ntTSL 5 BASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV3A0A0B4J244 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
TRAV3A0A0B4J244 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV3A0A0B4J244 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV3A0A0B4J244 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV3A0A0B4J244 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC15.6■□□□□ 0.09
TRAV3A0A0B4J244 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
TRAV3A0A0B4J244 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
TRAV3A0A0B4J244 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms