Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HOXC9P31274 RNU2-72P-201ENST00000411175 163 ntBASIC5.73□□□□□ -1.49
HOXC9P31274 CEACAMP8-201ENST00000413902 580 ntBASIC5.73□□□□□ -1.49
HOXC9P31274 VN1R31P-201ENST00000417498 730 ntBASIC5.73□□□□□ -1.49
HOXC9P31274 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
HOXC9P31274 AL389915.1-201ENST00000422463 466 ntBASIC5.73□□□□□ -1.49
HOXC9P31274 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HOXC9P31274 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC5.73□□□□□ -1.49
HOXC9P31274 AL162151.2-201ENST00000448875 158 ntBASIC5.73□□□□□ -1.49
HOXC9P31274 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC5.73□□□□□ -1.49
HOXC9P31274 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HOXC9P31274 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC5.73□□□□□ -1.49
HOXC9P31274 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC5.73□□□□□ -1.49
HOXC9P31274 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC5.73□□□□□ -1.49
HOXC9P31274 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.73□□□□□ -1.49
HOXC9P31274 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC5.73□□□□□ -1.49
HOXC9P31274 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC5.73□□□□□ -1.49
HOXC9P31274 RPL23AP97-201ENST00000568955 471 ntBASIC5.73□□□□□ -1.49
HOXC9P31274 AC245389.1-201ENST00000605141 529 ntBASIC5.73□□□□□ -1.49
HOXC9P31274 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC5.73□□□□□ -1.49
HOXC9P31274 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.73□□□□□ -1.49
HOXC9P31274 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC5.73□□□□□ -1.49
HOXC9P31274 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXC9P31274 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.73□□□□□ -1.49
HOXC9P31274 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
HOXC9P31274 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
HOXC9P31274 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
HOXC9P31274 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HOXC9P31274 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXC9P31274 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HOXC9P31274 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HOXC9P31274 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HOXC9P31274 RNU6-697P-201ENST00000363348 107 ntBASIC5.72□□□□□ -1.49
HOXC9P31274 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
HOXC9P31274 RPL21P65-201ENST00000406094 466 ntBASIC5.72□□□□□ -1.49
HOXC9P31274 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXC9P31274 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXC9P31274 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC5.72□□□□□ -1.49
HOXC9P31274 Z95327.1-201ENST00000446082 482 ntBASIC5.72□□□□□ -1.49
HOXC9P31274 VN1R32P-201ENST00000452234 905 ntBASIC5.72□□□□□ -1.49
HOXC9P31274 RPL23AP81-201ENST00000455252 467 ntBASIC5.72□□□□□ -1.49
HOXC9P31274 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC5.72□□□□□ -1.49
HOXC9P31274 RPL7P22-201ENST00000466005 733 ntBASIC5.72□□□□□ -1.49
HOXC9P31274 RPL23AP37-201ENST00000479658 549 ntBASIC5.72□□□□□ -1.49
HOXC9P31274 TPT1P3-201ENST00000492841 512 ntBASIC5.72□□□□□ -1.49
HOXC9P31274 PGBD4P4-201ENST00000509673 613 ntBASIC5.72□□□□□ -1.49
HOXC9P31274 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC5.72□□□□□ -1.49
HOXC9P31274 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC5.72□□□□□ -1.49
HOXC9P31274 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXC9P31274 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXC9P31274 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
HOXC9P31274 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXC9P31274 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC5.72□□□□□ -1.49
HOXC9P31274 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC5.72□□□□□ -1.49
HOXC9P31274 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXC9P31274 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC5.72□□□□□ -1.49
HOXC9P31274 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HOXC9P31274 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HOXC9P31274 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
HOXC9P31274 AL022311.1-201ENST00000623726 19416 ntBASIC5.72□□□□□ -1.49
HOXC9P31274 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.49
HOXC9P31274 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.49
HOXC9P31274 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.71□□□□□ -1.49
HOXC9P31274 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXC9P31274 AC116158.1-201ENST00000560231 2129 ntBASIC5.71□□□□□ -1.5
HOXC9P31274 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HOXC9P31274 VPS35P1-201ENST00000563400 1518 ntBASIC5.71□□□□□ -1.5
HOXC9P31274 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXC9P31274 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HOXC9P31274 AL359837.1-201ENST00000381357 287 ntBASIC5.71□□□□□ -1.5
HOXC9P31274 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC5.71□□□□□ -1.5
HOXC9P31274 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC5.71□□□□□ -1.5
HOXC9P31274 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXC9P31274 RAB9AP5-201ENST00000437794 597 ntBASIC5.71□□□□□ -1.5
HOXC9P31274 RAB9AP2-201ENST00000443911 597 ntBASIC5.71□□□□□ -1.5
HOXC9P31274 RN7SL542P-201ENST00000467147 294 ntBASIC5.71□□□□□ -1.5
HOXC9P31274 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC5.71□□□□□ -1.5
HOXC9P31274 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC5.71□□□□□ -1.5
HOXC9P31274 OSBPL9P2-201ENST00000526582 1228 ntBASIC5.71□□□□□ -1.5
HOXC9P31274 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HOXC9P31274 AL352979.3-201ENST00000553515 247 ntBASIC5.71□□□□□ -1.5
HOXC9P31274 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXC9P31274 HMGN2P47-201ENST00000559378 272 ntBASIC5.71□□□□□ -1.5
HOXC9P31274 MIR4429-201ENST00000580105 73 ntBASIC5.71□□□□□ -1.5
HOXC9P31274 RNU4-89P-201ENST00000607443 133 ntBASIC5.71□□□□□ -1.5
HOXC9P31274 AC006213.4-201ENST00000616184 634 ntBASIC5.71□□□□□ -1.5
HOXC9P31274 MIR8069-1-201ENST00000616627 86 ntBASIC5.71□□□□□ -1.5
HOXC9P31274 MIR6875-201ENST00000617506 72 ntBASIC5.71□□□□□ -1.5
HOXC9P31274 AC009032.1-201ENST00000617574 431 ntBASIC5.71□□□□□ -1.5
HOXC9P31274 MIR8069-2-201ENST00000621412 86 ntBASIC5.71□□□□□ -1.5
HOXC9P31274 AC034229.5-201ENST00000624258 185 ntBASIC5.71□□□□□ -1.5
HOXC9P31274 AC010608.2-201ENST00000624830 470 ntBASIC5.71□□□□□ -1.5
HOXC9P31274 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXC9P31274 AC133552.1-201ENST00000569988 4007 ntBASIC5.71□□□□□ -1.5
HOXC9P31274 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXC9P31274 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXC9P31274 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
HOXC9P31274 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.71□□□□□ -1.5
HOXC9P31274 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
HOXC9P31274 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms