Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HMGB1P09429 ADAM24P-201ENST00000398655 2101 ntBASIC6.41□□□□□ -1.38
HMGB1P09429 AP001273.1-201ENST00000624493 3152 ntBASIC6.41□□□□□ -1.38
HMGB1P09429 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HMGB1P09429 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
HMGB1P09429 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
HMGB1P09429 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
HMGB1P09429 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
HMGB1P09429 RN7SKP293-201ENST00000411389 296 ntBASIC6.41□□□□□ -1.38
HMGB1P09429 ZNF736P7Y-201ENST00000425158 820 ntBASIC6.41□□□□□ -1.38
HMGB1P09429 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC6.41□□□□□ -1.38
HMGB1P09429 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC6.41□□□□□ -1.38
HMGB1P09429 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC6.41□□□□□ -1.38
HMGB1P09429 AL161636.2-201ENST00000445179 927 ntBASIC6.41□□□□□ -1.38
HMGB1P09429 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC6.41□□□□□ -1.38
HMGB1P09429 CBX1P2-201ENST00000453841 458 ntBASIC6.41□□□□□ -1.38
HMGB1P09429 AC092754.1-201ENST00000472975 479 ntBASIC6.41□□□□□ -1.38
HMGB1P09429 AP000893.1-201ENST00000474462 794 ntBASIC6.41□□□□□ -1.38
HMGB1P09429 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC6.41□□□□□ -1.38
HMGB1P09429 RPSAP51-201ENST00000497462 645 ntBASIC6.41□□□□□ -1.38
HMGB1P09429 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC6.41□□□□□ -1.38
HMGB1P09429 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC6.41□□□□□ -1.38
HMGB1P09429 AC022360.1-201ENST00000521058 340 ntBASIC6.41□□□□□ -1.38
HMGB1P09429 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC6.41□□□□□ -1.38
HMGB1P09429 OR4A46P-201ENST00000527255 933 ntBASIC6.41□□□□□ -1.38
HMGB1P09429 DERA-209ENST00000532964 854 ntTSL 5 BASIC6.41□□□□□ -1.38
HMGB1P09429 AC024940.3-201ENST00000538551 316 ntBASIC6.41□□□□□ -1.38
HMGB1P09429 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC6.41□□□□□ -1.38
HMGB1P09429 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC6.41□□□□□ -1.38
HMGB1P09429 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC6.41□□□□□ -1.38
HMGB1P09429 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC6.41□□□□□ -1.38
HMGB1P09429 AC005341.1-201ENST00000571086 708 ntBASIC6.41□□□□□ -1.38
HMGB1P09429 TMF1P1-201ENST00000576058 373 ntBASIC6.41□□□□□ -1.38
HMGB1P09429 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC6.41□□□□□ -1.38
HMGB1P09429 AC008521.2-201ENST00000591021 259 ntBASIC6.41□□□□□ -1.38
HMGB1P09429 AP000769.2-201ENST00000602344 396 ntBASIC6.41□□□□□ -1.38
HMGB1P09429 AC108738.1-201ENST00000603703 237 ntBASIC6.41□□□□□ -1.38
HMGB1P09429 AL009028.1-201ENST00000604895 802 ntBASIC6.41□□□□□ -1.38
HMGB1P09429 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC6.41□□□□□ -1.38
HMGB1P09429 RN7SL787P-201ENST00000613000 284 ntBASIC6.41□□□□□ -1.38
HMGB1P09429 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC6.41□□□□□ -1.38
HMGB1P09429 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
HMGB1P09429 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC6.41□□□□□ -1.38
HMGB1P09429 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HMGB1P09429 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
HMGB1P09429 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
HMGB1P09429 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.38
HMGB1P09429 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
HMGB1P09429 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
HMGB1P09429 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
HMGB1P09429 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC6.4□□□□□ -1.38
HMGB1P09429 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
HMGB1P09429 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
HMGB1P09429 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
HMGB1P09429 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC6.4□□□□□ -1.38
HMGB1P09429 RNA5SP319-201ENST00000362768 119 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 FABP12P1-201ENST00000401911 322 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 AC092832.1-201ENST00000422934 400 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 SRSF1P1-201ENST00000424058 520 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC6.4□□□□□ -1.38
HMGB1P09429 RPS27P18-201ENST00000431701 247 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
HMGB1P09429 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC6.4□□□□□ -1.38
HMGB1P09429 RPL23AP33-201ENST00000442301 452 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
HMGB1P09429 RPL29P29-201ENST00000448725 423 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC6.4□□□□□ -1.38
HMGB1P09429 AL035090.1-201ENST00000454835 332 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 AC079841.1-201ENST00000481228 950 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 RN7SL273P-201ENST00000481561 299 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 AC090638.1-201ENST00000498296 909 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 IGBP1P4-201ENST00000503202 879 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC6.4□□□□□ -1.38
HMGB1P09429 AC018797.3-201ENST00000513388 1241 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 HMGN1P9-201ENST00000515212 298 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 HIGD1AP3-201ENST00000515857 278 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 CDC42P3-201ENST00000518493 633 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC6.4□□□□□ -1.38
HMGB1P09429 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC6.4□□□□□ -1.38
HMGB1P09429 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC6.4□□□□□ -1.38
HMGB1P09429 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC6.4□□□□□ -1.38
HMGB1P09429 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC6.4□□□□□ -1.38
HMGB1P09429 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC6.4□□□□□ -1.38
HMGB1P09429 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC6.4□□□□□ -1.38
HMGB1P09429 AC090330.1-201ENST00000588646 764 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 RPAP2P1-201ENST00000603626 1168 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 AC005014.3-201ENST00000605985 190 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 AC010245.2-201ENST00000606908 1167 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 AC015982.1-201ENST00000608113 465 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 AC007275.1-201ENST00000621243 671 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 AP003400.3-201ENST00000624904 346 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 AC126544.2-201ENST00000625174 749 ntBASIC6.4□□□□□ -1.38
HMGB1P09429 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC6.4□□□□□ -1.38
HMGB1P09429 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC6.4□□□□□ -1.38
HMGB1P09429 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC6.4□□□□□ -1.38
HMGB1P09429 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC6.4□□□□□ -1.39
HMGB1P09429 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
HMGB1P09429 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC6.4□□□□□ -1.39
HMGB1P09429 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
HMGB1P09429 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms