Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 OR2L1P-202ENST00000641567 1023 ntBASIC6.24□□□□□ -1.41
COL8A1P27658 AL121835.2-201ENST00000624253 3502 ntBASIC6.24□□□□□ -1.41
COL8A1P27658 RBM43-201ENST00000331426 4192 ntAPPRIS P2 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL8A1P27658 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC6.24□□□□□ -1.41
COL8A1P27658 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL8A1P27658 CNOT4-206ENST00000428680 4642 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL8A1P27658 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL8A1P27658 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL8A1P27658 MTPN-201ENST00000393085 3738 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL8A1P27658 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
COL8A1P27658 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL8A1P27658 AC025040.2-201ENST00000558657 1852 ntBASIC6.24□□□□□ -1.41
COL8A1P27658 UBR1-202ENST00000546274 3332 ntTSL 2 BASIC6.24□□□□□ -1.41
COL8A1P27658 HKR1-203ENST00000541583 2758 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL8A1P27658 B4GALT4-207ENST00000467604 5794 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL8A1P27658 NARS2-204ENST00000528850 2137 ntTSL 5 BASIC6.23□□□□□ -1.41
COL8A1P27658 PDZK1P1-201ENST00000401008 3498 ntTSL 2 BASIC6.23□□□□□ -1.41
COL8A1P27658 TTI1-201ENST00000373447 3825 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL8A1P27658 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL8A1P27658 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL8A1P27658 ZNF841-202ENST00000426391 3620 ntTSL 2 BASIC6.23□□□□□ -1.41
COL8A1P27658 POGZ-218ENST00000531094 4415 ntAPPRIS ALT1 TSL 2 BASIC6.23□□□□□ -1.41
COL8A1P27658 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL8A1P27658 MAGEB18-201ENST00000325250 1811 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL8A1P27658 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL8A1P27658 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC6.23□□□□□ -1.41
COL8A1P27658 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL8A1P27658 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC6.23□□□□□ -1.41
COL8A1P27658 KIF15-201ENST00000326047 4842 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL8A1P27658 KLHL8-203ENST00000498875 5175 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL8A1P27658 AC051619.3-201ENST00000560646 2426 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 AC010894.1-201ENST00000313760 361 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 RNU6-1066P-201ENST00000363573 105 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 RN7SKP189-201ENST00000365042 330 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC6.23□□□□□ -1.41
COL8A1P27658 RN7SKP229-201ENST00000410465 302 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 RN7SKP261-201ENST00000410948 278 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 RPLP1P10-201ENST00000413972 339 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC6.23□□□□□ -1.41
COL8A1P27658 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC6.23□□□□□ -1.41
COL8A1P27658 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC6.23□□□□□ -1.41
COL8A1P27658 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC6.23□□□□□ -1.41
COL8A1P27658 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC6.23□□□□□ -1.41
COL8A1P27658 RPEP2-201ENST00000432149 701 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC6.23□□□□□ -1.41
COL8A1P27658 NRBF2P3-201ENST00000432731 865 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 ZDHHC20P1-204ENST00000435787 423 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 HMGB1P12-201ENST00000438594 598 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 AL136380.1-201ENST00000447970 162 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 AC104306.1-201ENST00000449702 371 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC6.23□□□□□ -1.41
COL8A1P27658 AC007967.1-201ENST00000455422 1159 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 MTCO1P42-201ENST00000457379 726 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 RPL7P15-201ENST00000461190 712 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 AC117395.2-201ENST00000463122 1128 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC6.23□□□□□ -1.41
COL8A1P27658 TTC39CP1-201ENST00000512513 755 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL8A1P27658 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC6.23□□□□□ -1.41
COL8A1P27658 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC6.23□□□□□ -1.41
COL8A1P27658 IGHV7-34-1-201ENST00000519200 350 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 AC024224.1-201ENST00000538284 609 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 MYL2-203ENST00000548438 664 ntTSL 3 BASIC6.23□□□□□ -1.41
COL8A1P27658 AL358334.3-201ENST00000557343 535 ntTSL 3 BASIC6.23□□□□□ -1.41
COL8A1P27658 AC023908.2-201ENST00000558616 318 ntTSL 3 BASIC6.23□□□□□ -1.41
COL8A1P27658 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC6.23□□□□□ -1.41
COL8A1P27658 RN7SL199P-201ENST00000578752 281 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 RN7SL656P-201ENST00000579044 281 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 RN7SL270P-201ENST00000579643 281 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC6.23□□□□□ -1.41
COL8A1P27658 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC6.23□□□□□ -1.41
COL8A1P27658 MIR544B-201ENST00000582372 78 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 AC104695.2-201ENST00000605056 775 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC6.23□□□□□ -1.41
COL8A1P27658 RNU6-87P-201ENST00000607561 108 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 AC093635.1-201ENST00000609028 555 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 AC005899.7-201ENST00000618199 588 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC6.23□□□□□ -1.41
COL8A1P27658 AP003119.3-201ENST00000566747 4192 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC6.23□□□□□ -1.41
COL8A1P27658 DBF4P1-201ENST00000412976 1892 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC6.23□□□□□ -1.41
COL8A1P27658 MTND5P19-201ENST00000424872 1794 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 LINC02431-202ENST00000505329 1788 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL8A1P27658 AL021877.2-201ENST00000624442 10684 ntBASIC6.23□□□□□ -1.41
COL8A1P27658 CR1-203ENST00000367051 7469 ntTSL 5 BASIC6.23□□□□□ -1.41
COL8A1P27658 CFAP61-205ENST00000377306 2017 ntTSL 5 BASIC6.23□□□□□ -1.41
COL8A1P27658 FBXO36-202ENST00000373652 3120 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL8A1P27658 PPP4R3CP-201ENST00000412172 3131 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
COL8A1P27658 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC6.23□□□□□ -1.41
COL8A1P27658 SOX6-211ENST00000528429 2656 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 SP140-205ENST00000420434 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 BRCA1-201ENST00000352993 3668 ntTSL 5 BASIC6.22□□□□□ -1.41
COL8A1P27658 LY75-201ENST00000263636 6886 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 AC135178.2-201ENST00000582471 3087 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
COL8A1P27658 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
COL8A1P27658 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC6.22□□□□□ -1.41
COL8A1P27658 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
COL8A1P27658 ZNF10-202ENST00000402932 1967 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms