Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 AC005042.1-201ENST00000393397 800 ntBASIC5.35□□□□□ -1.55
PROM1O43490 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
PROM1O43490 HMGB1P20-201ENST00000402555 677 ntBASIC5.35□□□□□ -1.55
PROM1O43490 AL391361.1-201ENST00000405580 489 ntBASIC5.35□□□□□ -1.55
PROM1O43490 RN7SKP293-201ENST00000411389 296 ntBASIC5.35□□□□□ -1.55
PROM1O43490 RPS6P23-201ENST00000413224 722 ntBASIC5.35□□□□□ -1.55
PROM1O43490 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC5.35□□□□□ -1.55
PROM1O43490 OR4K6P-201ENST00000416478 897 ntBASIC5.35□□□□□ -1.55
PROM1O43490 OR10T1P-201ENST00000424327 947 ntBASIC5.35□□□□□ -1.55
PROM1O43490 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC5.35□□□□□ -1.55
PROM1O43490 COX7BP2-201ENST00000437976 242 ntBASIC5.35□□□□□ -1.55
PROM1O43490 PA2G4P6-201ENST00000438325 1197 ntBASIC5.35□□□□□ -1.55
PROM1O43490 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.35□□□□□ -1.55
PROM1O43490 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC5.35□□□□□ -1.55
PROM1O43490 AC064862.4-201ENST00000442180 334 ntBASIC5.35□□□□□ -1.55
PROM1O43490 MED28P3-201ENST00000444288 531 ntBASIC5.35□□□□□ -1.55
PROM1O43490 AL035551.1-201ENST00000446931 348 ntBASIC5.35□□□□□ -1.55
PROM1O43490 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.35□□□□□ -1.55
PROM1O43490 AC233982.1-201ENST00000451247 436 ntBASIC5.35□□□□□ -1.55
PROM1O43490 RPS27AP8-201ENST00000452665 445 ntBASIC5.35□□□□□ -1.55
PROM1O43490 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.35□□□□□ -1.55
PROM1O43490 YWHAEP1-201ENST00000453697 763 ntBASIC5.35□□□□□ -1.55
PROM1O43490 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC5.35□□□□□ -1.55
PROM1O43490 RN7SL197P-201ENST00000466981 299 ntBASIC5.35□□□□□ -1.55
PROM1O43490 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
PROM1O43490 AC108734.3-201ENST00000481241 1165 ntBASIC5.35□□□□□ -1.55
PROM1O43490 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC5.35□□□□□ -1.55
PROM1O43490 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC5.35□□□□□ -1.55
PROM1O43490 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
PROM1O43490 MTND5P13-201ENST00000513046 1079 ntBASIC5.35□□□□□ -1.55
PROM1O43490 RNU6-1308P-201ENST00000516817 103 ntBASIC5.35□□□□□ -1.55
PROM1O43490 IGLV3-24-201ENST00000517477 197 ntBASIC5.35□□□□□ -1.55
PROM1O43490 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC5.35□□□□□ -1.55
PROM1O43490 PTK2-220ENST00000520151 573 ntTSL 4 BASIC5.35□□□□□ -1.55
PROM1O43490 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC5.35□□□□□ -1.55
PROM1O43490 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.35□□□□□ -1.55
PROM1O43490 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC5.35□□□□□ -1.55
PROM1O43490 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.35□□□□□ -1.55
PROM1O43490 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.35□□□□□ -1.55
PROM1O43490 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC5.35□□□□□ -1.55
PROM1O43490 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC5.35□□□□□ -1.55
PROM1O43490 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC5.35□□□□□ -1.55
PROM1O43490 DPRXP4-201ENST00000578053 568 ntBASIC5.35□□□□□ -1.55
PROM1O43490 AC022662.1-201ENST00000580252 331 ntBASIC5.35□□□□□ -1.55
PROM1O43490 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.35□□□□□ -1.55
PROM1O43490 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC5.35□□□□□ -1.55
PROM1O43490 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.35□□□□□ -1.55
PROM1O43490 RNA5SP440-201ENST00000612665 119 ntBASIC5.35□□□□□ -1.55
PROM1O43490 MIR6798-201ENST00000612887 67 ntBASIC5.35□□□□□ -1.55
PROM1O43490 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.35□□□□□ -1.55
PROM1O43490 AL158163.2-201ENST00000619110 700 ntBASIC5.35□□□□□ -1.55
PROM1O43490 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
PROM1O43490 MIR6719-201ENST00000622428 87 ntBASIC5.35□□□□□ -1.55
PROM1O43490 RPL23AP61-201ENST00000623642 466 ntBASIC5.35□□□□□ -1.55
PROM1O43490 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.35□□□□□ -1.55
PROM1O43490 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
PROM1O43490 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
PROM1O43490 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
PROM1O43490 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
PROM1O43490 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
PROM1O43490 MRE11P1-201ENST00000464884 2127 ntBASIC5.35□□□□□ -1.55
PROM1O43490 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
PROM1O43490 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
PROM1O43490 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
PROM1O43490 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.34□□□□□ -1.55
PROM1O43490 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
PROM1O43490 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.34□□□□□ -1.55
PROM1O43490 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
PROM1O43490 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
PROM1O43490 PWAR1-201ENST00000624188 2414 ntBASIC5.34□□□□□ -1.55
PROM1O43490 AL049737.1-201ENST00000413920 1403 ntBASIC5.34□□□□□ -1.55
PROM1O43490 VN2R3P-201ENST00000422626 1412 ntBASIC5.34□□□□□ -1.55
PROM1O43490 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
PROM1O43490 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.34□□□□□ -1.55
PROM1O43490 OR9K1P-202ENST00000641111 3217 ntBASIC5.34□□□□□ -1.55
PROM1O43490 LINC01963-201ENST00000562038 3148 ntBASIC5.34□□□□□ -1.55
PROM1O43490 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
PROM1O43490 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
PROM1O43490 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
PROM1O43490 Y_RNA.51-201ENST00000362725 102 ntBASIC5.34□□□□□ -1.55
PROM1O43490 MIR143-201ENST00000385300 106 ntBASIC5.34□□□□□ -1.55
PROM1O43490 MT-TP-201ENST00000387461 68 ntBASIC5.34□□□□□ -1.55
PROM1O43490 CHMP1B2P-201ENST00000399581 597 ntBASIC5.34□□□□□ -1.55
PROM1O43490 ERHP2-201ENST00000402323 299 ntBASIC5.34□□□□□ -1.55
PROM1O43490 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.34□□□□□ -1.55
PROM1O43490 SDHDP6-201ENST00000414693 480 ntBASIC5.34□□□□□ -1.55
PROM1O43490 AC079809.1-201ENST00000415468 276 ntBASIC5.34□□□□□ -1.55
PROM1O43490 RPL7P53-201ENST00000421245 739 ntBASIC5.34□□□□□ -1.55
PROM1O43490 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC5.34□□□□□ -1.55
PROM1O43490 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.34□□□□□ -1.55
PROM1O43490 AC023271.1-201ENST00000445936 1090 ntBASIC5.34□□□□□ -1.55
PROM1O43490 ELOCP30-201ENST00000447108 299 ntBASIC5.34□□□□□ -1.55
PROM1O43490 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC5.34□□□□□ -1.55
PROM1O43490 SNORD125-201ENST00000459538 96 ntBASIC5.34□□□□□ -1.55
PROM1O43490 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
PROM1O43490 DUTP7-201ENST00000507982 486 ntBASIC5.34□□□□□ -1.55
PROM1O43490 BTG4P1-201ENST00000510421 183 ntBASIC5.34□□□□□ -1.55
PROM1O43490 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC5.34□□□□□ -1.55
PROM1O43490 RNU6-615P-201ENST00000516065 106 ntBASIC5.34□□□□□ -1.55
PROM1O43490 NAT2-202ENST00000520116 716 ntTSL 3 BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms