Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 GAPDHP49-201ENST00000421421 961 ntBASIC1.4□□□□□ -2.18
SYNE1Q8NF91 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC1.4□□□□□ -2.18
SYNE1Q8NF91 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC1.4□□□□□ -2.18
SYNE1Q8NF91 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC1.4□□□□□ -2.18
SYNE1Q8NF91 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC1.4□□□□□ -2.18
SYNE1Q8NF91 MYLK-221ENST00000583087 678 ntTSL 4 BASIC1.4□□□□□ -2.18
SYNE1Q8NF91 AL049794.2-201ENST00000616301 365 ntBASIC1.4□□□□□ -2.18
SYNE1Q8NF91 AC024023.1-201ENST00000624530 922 ntBASIC1.4□□□□□ -2.18
SYNE1Q8NF91 AC140479.6-201ENST00000633535 357 ntBASIC1.4□□□□□ -2.18
SYNE1Q8NF91 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 RNA5SP44-201ENST00000410446 133 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 OR13Z1P-201ENST00000416141 834 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 AK4P6-201ENST00000505168 528 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 BUD31P1-201ENST00000521828 359 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 MIR6875-201ENST00000617506 72 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 AC021106.3-201ENST00000623925 531 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 AL442128.2-201ENST00000620246 1824 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 UBBP2-201ENST00000376781 231 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 RPS5P7-201ENST00000456664 608 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 AC245389.1-201ENST00000605141 529 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 AC006504.1-201ENST00000562493 3666 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 CYP1D1P-201ENST00000416662 1433 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 AC011447.7-201ENST00000624228 1590 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 IGKV1OR9-1-201ENST00000424370 284 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 SLC25A18P1-201ENST00000449385 454 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 CEACAMP6-201ENST00000452007 574 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 MTND2P28-201ENST00000457540 1044 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 snoU13.24-201ENST00000458998 104 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 AC116562.1-201ENST00000485355 781 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 AC068993.1-201ENST00000546724 589 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 AC023632.6-201ENST00000624338 2177 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 ACTR3BP2-202ENST00000623630 1338 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 Y_RNA.111-201ENST00000363248 100 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 LRRC37BP1-201ENST00000398851 714 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 AC069304.1-201ENST00000491593 704 ntBASIC1.4□□□□□ -2.19
SYNE1Q8NF91 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 NELL2-211ENST00000548826 559 ntTSL 2 BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
SYNE1Q8NF91 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
SYNE1Q8NF91 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
SYNE1Q8NF91 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
SYNE1Q8NF91 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
SYNE1Q8NF91 RPL31-204ENST00000409038 817 ntTSL 2 BASIC1.39□□□□□ -2.19
SYNE1Q8NF91 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC1.39□□□□□ -2.19
SYNE1Q8NF91 RPL23AP26-201ENST00000412728 464 ntBASIC1.39□□□□□ -2.19
SYNE1Q8NF91 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC1.39□□□□□ -2.19
SYNE1Q8NF91 RNU2-30P-201ENST00000516209 141 ntBASIC1.39□□□□□ -2.19
SYNE1Q8NF91 CARD16-203ENST00000525374 503 ntTSL 3 BASIC1.39□□□□□ -2.19
SYNE1Q8NF91 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC1.39□□□□□ -2.19
SYNE1Q8NF91 AC009852.2-201ENST00000567898 485 ntBASIC1.39□□□□□ -2.19
SYNE1Q8NF91 ARF4P1-201ENST00000605447 541 ntBASIC1.39□□□□□ -2.19
SYNE1Q8NF91 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
SYNE1Q8NF91 AC025574.1-201ENST00000554784 1653 ntBASIC1.39□□□□□ -2.19
SYNE1Q8NF91 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC1.39□□□□□ -2.19
SYNE1Q8NF91 AL391684.1-202ENST00000641293 1636 ntBASIC1.39□□□□□ -2.19
SYNE1Q8NF91 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
SYNE1Q8NF91 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
SYNE1Q8NF91 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC1.39□□□□□ -2.19
SYNE1Q8NF91 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms