Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
PRKDCP78527 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
PRKDCP78527 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.06□□□□□ -1.92
PRKDCP78527 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC3.06□□□□□ -1.92
PRKDCP78527 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC3.06□□□□□ -1.92
PRKDCP78527 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.06□□□□□ -1.92
PRKDCP78527 AC120057.2-201ENST00000571520 271 ntBASIC3.06□□□□□ -1.92
PRKDCP78527 FP325313.1-201ENST00000638228 703 ntBASIC3.06□□□□□ -1.92
PRKDCP78527 CHD8-213ENST00000557364 8137 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
PRKDCP78527 CHD2-201ENST00000394196 9363 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
PRKDCP78527 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC3.06□□□□□ -1.92
PRKDCP78527 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
PRKDCP78527 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
PRKDCP78527 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
PRKDCP78527 FREM1-202ENST00000380880 7324 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
PRKDCP78527 WDR7-213ENST00000615645 5257 ntTSL 5 BASIC3.05□□□□□ -1.92
PRKDCP78527 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
PRKDCP78527 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.05□□□□□ -1.92
PRKDCP78527 AL035079.1-201ENST00000405210 287 ntBASIC3.05□□□□□ -1.92
PRKDCP78527 RN7SKP182-201ENST00000410772 298 ntBASIC3.05□□□□□ -1.92
PRKDCP78527 AC108032.1-201ENST00000416706 207 ntBASIC3.05□□□□□ -1.92
PRKDCP78527 PDSS1P2-201ENST00000449397 678 ntBASIC3.05□□□□□ -1.92
PRKDCP78527 RPS4XP10-201ENST00000465034 731 ntBASIC3.05□□□□□ -1.92
PRKDCP78527 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC3.05□□□□□ -1.92
PRKDCP78527 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.05□□□□□ -1.92
PRKDCP78527 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.05□□□□□ -1.92
PRKDCP78527 BDH2P1-201ENST00000602288 736 ntBASIC3.05□□□□□ -1.92
PRKDCP78527 AC110801.1-201ENST00000623590 212 ntBASIC3.05□□□□□ -1.92
PRKDCP78527 AL359757.2-201ENST00000624309 274 ntBASIC3.05□□□□□ -1.92
PRKDCP78527 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC3.05□□□□□ -1.92
PRKDCP78527 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC3.05□□□□□ -1.92
PRKDCP78527 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PRKDCP78527 IKZF3-203ENST00000346872 9667 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PRKDCP78527 RUNX1T1-249ENST00000613886 7401 ntAPPRIS ALT1 TSL 5 BASIC3.05□□□□□ -1.92
PRKDCP78527 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PRKDCP78527 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
PRKDCP78527 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PRKDCP78527 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
PRKDCP78527 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
PRKDCP78527 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PRKDCP78527 CA5B-201ENST00000318636 6835 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PRKDCP78527 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC3.05□□□□□ -1.92
PRKDCP78527 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC3.05□□□□□ -1.92
PRKDCP78527 OR5BE1P-201ENST00000425977 939 ntBASIC3.05□□□□□ -1.92
PRKDCP78527 AC004980.3-201ENST00000447046 365 ntBASIC3.05□□□□□ -1.92
PRKDCP78527 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.05□□□□□ -1.92
PRKDCP78527 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC3.05□□□□□ -1.92
PRKDCP78527 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC3.05□□□□□ -1.92
PRKDCP78527 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC3.05□□□□□ -1.92
PRKDCP78527 AC087477.6-201ENST00000559595 843 ntBASIC3.05□□□□□ -1.92
PRKDCP78527 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
PRKDCP78527 AL033523.1-201ENST00000605153 153 ntBASIC3.05□□□□□ -1.92
PRKDCP78527 OR5BE1P-202ENST00000641168 1176 ntBASIC3.05□□□□□ -1.92
PRKDCP78527 DNM1P47-203ENST00000571780 12667 ntBASIC3.05□□□□□ -1.92
PRKDCP78527 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
PRKDCP78527 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC3.05□□□□□ -1.92
PRKDCP78527 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
PRKDCP78527 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
PRKDCP78527 IL6STP1-201ENST00000346911 1020 ntBASIC3.05□□□□□ -1.92
PRKDCP78527 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
PRKDCP78527 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.05□□□□□ -1.92
PRKDCP78527 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC3.05□□□□□ -1.92
PRKDCP78527 A1CF-201ENST00000282641 9350 ntAPPRIS ALT1 TSL 2 BASIC3.05□□□□□ -1.92
PRKDCP78527 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC3.05□□□□□ -1.92
PRKDCP78527 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC3.05□□□□□ -1.92
PRKDCP78527 MAP3K9-207ENST00000611979 10497 ntTSL 5 BASIC3.05□□□□□ -1.92
PRKDCP78527 AC139769.1-204ENST00000472297 1931 ntBASIC3.05□□□□□ -1.92
PRKDCP78527 SNX18P3-202ENST00000565670 1750 ntBASIC3.05□□□□□ -1.92
PRKDCP78527 PPM1L-205ENST00000498165 10934 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PRKDCP78527 MTCO1P46-201ENST00000451639 1491 ntBASIC3.05□□□□□ -1.92
PRKDCP78527 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
PRKDCP78527 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
PRKDCP78527 AL445487.1-201ENST00000415694 1580 ntBASIC3.05□□□□□ -1.92
PRKDCP78527 RNA5SP453-201ENST00000362503 119 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 RNA5SP307-201ENST00000362863 116 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 AL356968.2-201ENST00000412769 1257 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 UBE2V1P3-201ENST00000439651 417 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 UBDP1-202ENST00000457888 382 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC3.04□□□□□ -1.92
PRKDCP78527 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC3.04□□□□□ -1.92
PRKDCP78527 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC3.04□□□□□ -1.92
PRKDCP78527 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
PRKDCP78527 AC016957.2-201ENST00000616998 848 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
PRKDCP78527 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC3.04□□□□□ -1.92
PRKDCP78527 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC3.04□□□□□ -1.92
PRKDCP78527 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
PRKDCP78527 DMD-222ENST00000474231 5209 ntTSL 5 BASIC3.04□□□□□ -1.92
PRKDCP78527 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
PRKDCP78527 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
PRKDCP78527 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC3.04□□□□□ -1.92
PRKDCP78527 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC3.04□□□□□ -1.92
PRKDCP78527 RPS27AP17-201ENST00000463344 455 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 AC037198.2-201ENST00000478845 733 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC3.04□□□□□ -1.92
PRKDCP78527 U3.45-201ENST00000607547 219 ntBASIC3.04□□□□□ -1.92
PRKDCP78527 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
PRKDCP78527 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC3.04□□□□□ -1.92
PRKDCP78527 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
PRKDCP78527 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms