Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC88AQ3V6T2 AL731532.2-201ENST00000623542 1953 ntBASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 AC010266.2-201ENST00000564741 3255 ntBASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 MIR331-201ENST00000362302 94 ntBASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 SNORA11.1-201ENST00000408133 129 ntBASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 GLS-204ENST00000409428 816 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 EIF4A1P1-201ENST00000420241 934 ntBASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC88AQ3V6T2 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 PVALB-202ENST00000404171 422 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 ISCUP1-201ENST00000454451 448 ntBASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 OR7E10P-201ENST00000526420 991 ntBASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 FKBP1BP1-201ENST00000553366 325 ntBASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 PSMB7P1-201ENST00000556349 514 ntBASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 RN7SL600P-201ENST00000581811 299 ntBASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 AC020634.1-201ENST00000608701 549 ntBASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 Y_RNA.333-201ENST00000365274 102 ntBASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 RNU6ATAC-201ENST00000408749 126 ntBASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 HYKK-202ENST00000408962 847 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 ARAFP2-201ENST00000440565 559 ntBASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 RPL7P33-201ENST00000444159 742 ntBASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 CARD16-203ENST00000525374 503 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 HYKK-203ENST00000563233 734 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 MIR4298-201ENST00000584380 73 ntBASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 AC069200.1-201ENST00000609511 323 ntBASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 EIF2AP4-201ENST00000424793 1781 ntBASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 AC107068.1-201ENST00000563286 4218 ntBASIC5.49□□□□□ -1.53
CCDC88AQ3V6T2 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 NCOA4P2-201ENST00000340589 1813 ntBASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 RNA5SP124-201ENST00000362739 110 ntBASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 RNU1-63P-201ENST00000383902 164 ntBASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 SNORA9-201ENST00000384215 133 ntBASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 U3.23-201ENST00000391132 200 ntBASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 SNRPFP1-201ENST00000414761 252 ntBASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 ARL4AP4-201ENST00000434170 518 ntBASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 AC098799.3-201ENST00000506095 438 ntBASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 AC113403.1-201ENST00000604910 193 ntBASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 AC073137.1-201ENST00000605636 634 ntBASIC5.48□□□□□ -1.53
CCDC88AQ3V6T2 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms