Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 AC006333.2-201ENST00000607957 2099 ntBASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 AC020916.1-201ENST00000587762 1774 ntBASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USH1CQ9Y6N9 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USH1CQ9Y6N9 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.36■□□□□ 0.69
USH1CQ9Y6N9 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USH1CQ9Y6N9 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
USH1CQ9Y6N9 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
USH1CQ9Y6N9 AC090164.3-201ENST00000610780 2143 ntBASIC19.36■□□□□ 0.69
USH1CQ9Y6N9 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
USH1CQ9Y6N9 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USH1CQ9Y6N9 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.36■□□□□ 0.69
USH1CQ9Y6N9 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USH1CQ9Y6N9 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.36■□□□□ 0.69
USH1CQ9Y6N9 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.36■□□□□ 0.69
USH1CQ9Y6N9 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USH1CQ9Y6N9 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USH1CQ9Y6N9 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 AP001271.2-201ENST00000624018 1556 ntBASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.35■□□□□ 0.69
USH1CQ9Y6N9 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 AL133373.2-201ENST00000623187 2828 ntBASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 KRT8P17-201ENST00000453110 1448 ntBASIC19.34■□□□□ 0.69
USH1CQ9Y6N9 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.33■□□□□ 0.69
USH1CQ9Y6N9 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USH1CQ9Y6N9 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USH1CQ9Y6N9 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.33■□□□□ 0.69
USH1CQ9Y6N9 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
USH1CQ9Y6N9 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
USH1CQ9Y6N9 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
USH1CQ9Y6N9 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
USH1CQ9Y6N9 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
USH1CQ9Y6N9 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.33■□□□□ 0.69
USH1CQ9Y6N9 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.33■□□□□ 0.69
USH1CQ9Y6N9 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
USH1CQ9Y6N9 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.33■□□□□ 0.68
USH1CQ9Y6N9 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
USH1CQ9Y6N9 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.33■□□□□ 0.68
USH1CQ9Y6N9 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USH1CQ9Y6N9 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.33■□□□□ 0.68
USH1CQ9Y6N9 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
USH1CQ9Y6N9 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.33■□□□□ 0.68
USH1CQ9Y6N9 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USH1CQ9Y6N9 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USH1CQ9Y6N9 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USH1CQ9Y6N9 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USH1CQ9Y6N9 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
USH1CQ9Y6N9 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms