Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDHGA3Q9Y5H0 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 KSR1P1-201ENST00000446298 240 ntBASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 REXO1L10P-201ENST00000615707 1290 ntBASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA3Q9Y5H0 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
PCDHGA3Q9Y5H0 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
PCDHGA3Q9Y5H0 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
PCDHGA3Q9Y5H0 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
PCDHGA3Q9Y5H0 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.89■□□□□ 0.61
PCDHGA3Q9Y5H0 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.89■□□□□ 0.61
PCDHGA3Q9Y5H0 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.89■□□□□ 0.61
PCDHGA3Q9Y5H0 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.89■□□□□ 0.61
PCDHGA3Q9Y5H0 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
PCDHGA3Q9Y5H0 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA3Q9Y5H0 TMPOP1-202ENST00000424642 1267 ntBASIC18.89■□□□□ 0.61
PCDHGA3Q9Y5H0 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.89■□□□□ 0.61
PCDHGA3Q9Y5H0 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA3Q9Y5H0 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
PCDHGA3Q9Y5H0 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
PCDHGA3Q9Y5H0 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.89■□□□□ 0.61
PCDHGA3Q9Y5H0 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.89■□□□□ 0.61
PCDHGA3Q9Y5H0 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 NIFKP9-201ENST00000419265 221 ntBASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 AC116562.2-201ENST00000507042 360 ntBASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 AC079598.2-202ENST00000546624 1451 ntBASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
PCDHGA3Q9Y5H0 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
PCDHGA3Q9Y5H0 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
PCDHGA3Q9Y5H0 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms