Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS29Q9UBQ0 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
VPS29Q9UBQ0 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.58
VPS29Q9UBQ0 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VPS29Q9UBQ0 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
VPS29Q9UBQ0 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.64■□□□□ 0.58
VPS29Q9UBQ0 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 ZNF815P-204ENST00000434898 1737 ntBASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 AL355802.2-201ENST00000402069 882 ntBASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS29Q9UBQ0 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 HLA-L-209ENST00000420110 1011 ntBASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 UNC93B4-201ENST00000505679 747 ntBASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS29Q9UBQ0 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 AC120498.9-201ENST00000339021 3867 ntBASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 KRT8P8-201ENST00000434750 1448 ntBASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS29Q9UBQ0 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms