Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.23■□□□□ 0.67
MKS1Q9NXB0 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
MKS1Q9NXB0 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
MKS1Q9NXB0 LETM1P2-201ENST00000597330 2178 ntBASIC19.23■□□□□ 0.67
MKS1Q9NXB0 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
MKS1Q9NXB0 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.23■□□□□ 0.67
MKS1Q9NXB0 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
MKS1Q9NXB0 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 AC104417.2-201ENST00000562989 1793 ntBASIC19.22■□□□□ 0.67
MKS1Q9NXB0 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 AC006015.1-201ENST00000429970 570 ntBASIC19.22■□□□□ 0.67
MKS1Q9NXB0 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 AC231657.2-201ENST00000624556 255 ntBASIC19.22■□□□□ 0.67
MKS1Q9NXB0 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
MKS1Q9NXB0 AC104581.1-202ENST00000635932 2618 ntBASIC19.21■□□□□ 0.67
MKS1Q9NXB0 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 AC011767.1-201ENST00000617410 1153 ntBASIC19.21■□□□□ 0.67
MKS1Q9NXB0 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.21■□□□□ 0.67
MKS1Q9NXB0 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.2■□□□□ 0.66
MKS1Q9NXB0 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MKS1Q9NXB0 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
MKS1Q9NXB0 AL390961.4-201ENST00000623958 2535 ntBASIC19.2■□□□□ 0.66
MKS1Q9NXB0 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.2■□□□□ 0.66
MKS1Q9NXB0 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.2■□□□□ 0.66
MKS1Q9NXB0 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.2■□□□□ 0.66
MKS1Q9NXB0 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.2■□□□□ 0.66
MKS1Q9NXB0 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.2■□□□□ 0.66
MKS1Q9NXB0 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MKS1Q9NXB0 AL512353.2-201ENST00000448759 1962 ntBASIC19.2■□□□□ 0.66
MKS1Q9NXB0 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.2■□□□□ 0.66
MKS1Q9NXB0 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MKS1Q9NXB0 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MKS1Q9NXB0 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MKS1Q9NXB0 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
MKS1Q9NXB0 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
MKS1Q9NXB0 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
MKS1Q9NXB0 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.2■□□□□ 0.66
MKS1Q9NXB0 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.19■□□□□ 0.66
MKS1Q9NXB0 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MKS1Q9NXB0 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MKS1Q9NXB0 SDHAP1-207ENST00000440850 2000 ntBASIC19.19■□□□□ 0.66
MKS1Q9NXB0 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MKS1Q9NXB0 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MKS1Q9NXB0 AC016769.1-201ENST00000409132 1010 ntBASIC19.19■□□□□ 0.66
MKS1Q9NXB0 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.19■□□□□ 0.66
MKS1Q9NXB0 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.19■□□□□ 0.66
MKS1Q9NXB0 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.19■□□□□ 0.66
MKS1Q9NXB0 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MKS1Q9NXB0 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MKS1Q9NXB0 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
MKS1Q9NXB0 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
MKS1Q9NXB0 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MKS1Q9NXB0 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MKS1Q9NXB0 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MKS1Q9NXB0 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms