Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.05■□□□□ 0.8
USP29Q9HBJ7 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.05■□□□□ 0.8
USP29Q9HBJ7 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP29Q9HBJ7 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP29Q9HBJ7 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP29Q9HBJ7 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP29Q9HBJ7 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP29Q9HBJ7 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.05■□□□□ 0.8
USP29Q9HBJ7 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 AL596275.1-201ENST00000423464 877 ntBASIC20.04■□□□□ 0.8
USP29Q9HBJ7 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.04■□□□□ 0.8
USP29Q9HBJ7 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP29Q9HBJ7 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP29Q9HBJ7 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP29Q9HBJ7 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP29Q9HBJ7 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP29Q9HBJ7 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.02■□□□□ 0.8
USP29Q9HBJ7 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
USP29Q9HBJ7 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.02■□□□□ 0.8
USP29Q9HBJ7 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP29Q9HBJ7 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USP29Q9HBJ7 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.02■□□□□ 0.8
USP29Q9HBJ7 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.02■□□□□ 0.8
USP29Q9HBJ7 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.02■□□□□ 0.8
USP29Q9HBJ7 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.02■□□□□ 0.8
USP29Q9HBJ7 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.02■□□□□ 0.8
USP29Q9HBJ7 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP29Q9HBJ7 FAM197Y4-202ENST00000622692 608 ntBASIC20.02■□□□□ 0.8
USP29Q9HBJ7 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP29Q9HBJ7 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP29Q9HBJ7 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USP29Q9HBJ7 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.02■□□□□ 0.8
USP29Q9HBJ7 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.02■□□□□ 0.79
USP29Q9HBJ7 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.02■□□□□ 0.79
USP29Q9HBJ7 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
USP29Q9HBJ7 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
USP29Q9HBJ7 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
USP29Q9HBJ7 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
USP29Q9HBJ7 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP29Q9HBJ7 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP29Q9HBJ7 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
USP29Q9HBJ7 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.01■□□□□ 0.79
USP29Q9HBJ7 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP29Q9HBJ7 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP29Q9HBJ7 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP29Q9HBJ7 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
USP29Q9HBJ7 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP29Q9HBJ7 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP29Q9HBJ7 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP29Q9HBJ7 RN7SL471P-201ENST00000580476 299 ntBASIC20.01■□□□□ 0.79
USP29Q9HBJ7 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.01■□□□□ 0.79
USP29Q9HBJ7 AC120498.8-201ENST00000614275 531 ntBASIC20.01■□□□□ 0.79
USP29Q9HBJ7 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms