Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.55■■□□□ 1.04
CCDC113Q9H0I3 TMEM179-206ENST00000616017 1645 ntBASIC21.55■■□□□ 1.04
CCDC113Q9H0I3 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC113Q9H0I3 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC21.55■■□□□ 1.04
CCDC113Q9H0I3 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC113Q9H0I3 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC113Q9H0I3 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC113Q9H0I3 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC113Q9H0I3 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC113Q9H0I3 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC113Q9H0I3 STX6-204ENST00000542060 4809 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC113Q9H0I3 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC113Q9H0I3 SNORA78-201ENST00000459373 127 ntBASIC21.54■■□□□ 1.04
CCDC113Q9H0I3 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC113Q9H0I3 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC21.54■■□□□ 1.04
CCDC113Q9H0I3 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC113Q9H0I3 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC113Q9H0I3 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC113Q9H0I3 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC113Q9H0I3 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC113Q9H0I3 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC113Q9H0I3 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
CCDC113Q9H0I3 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC113Q9H0I3 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC113Q9H0I3 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC21.53■■□□□ 1.04
CCDC113Q9H0I3 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC113Q9H0I3 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC113Q9H0I3 SAPCD2P4-201ENST00000424595 1171 ntBASIC21.53■■□□□ 1.04
CCDC113Q9H0I3 AL353807.1-201ENST00000427475 662 ntBASIC21.53■■□□□ 1.04
CCDC113Q9H0I3 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC113Q9H0I3 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC113Q9H0I3 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC113Q9H0I3 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC113Q9H0I3 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC113Q9H0I3 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC113Q9H0I3 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC113Q9H0I3 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC21.53■■□□□ 1.04
CCDC113Q9H0I3 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
CCDC113Q9H0I3 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
CCDC113Q9H0I3 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 RPS15-203ENST00000586096 570 ntTSL 2 BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
CCDC113Q9H0I3 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.03
CCDC113Q9H0I3 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC21.52■■□□□ 1.03
CCDC113Q9H0I3 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
CCDC113Q9H0I3 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 TSPY7P-201ENST00000431358 1114 ntBASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 TUBB8P6-201ENST00000436895 1288 ntBASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 GRAP-204ENST00000573099 846 ntTSL 3 BASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 AP001412.1-201ENST00000608405 714 ntBASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 PCDHAC2-203ENST00000615316 3011 ntBASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CCDC113Q9H0I3 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CCDC113Q9H0I3 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC113Q9H0I3 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
CCDC113Q9H0I3 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CCDC113Q9H0I3 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC113Q9H0I3 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CCDC113Q9H0I3 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC113Q9H0I3 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC113Q9H0I3 NIFKP9-201ENST00000419265 221 ntBASIC21.5■■□□□ 1.03
CCDC113Q9H0I3 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC21.5■■□□□ 1.03
CCDC113Q9H0I3 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
CCDC113Q9H0I3 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC113Q9H0I3 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC21.5■■□□□ 1.03
CCDC113Q9H0I3 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms