Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM4Q9C037 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM4Q9C037 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM4Q9C037 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM4Q9C037 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM4Q9C037 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM4Q9C037 AL512625.2-201ENST00000417533 625 ntBASIC19.34■□□□□ 0.69
TRIM4Q9C037 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
TRIM4Q9C037 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.34■□□□□ 0.69
TRIM4Q9C037 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.34■□□□□ 0.69
TRIM4Q9C037 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.34■□□□□ 0.69
TRIM4Q9C037 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM4Q9C037 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
TRIM4Q9C037 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
TRIM4Q9C037 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
TRIM4Q9C037 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM4Q9C037 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM4Q9C037 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.34■□□□□ 0.69
TRIM4Q9C037 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM4Q9C037 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM4Q9C037 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.34■□□□□ 0.69
TRIM4Q9C037 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM4Q9C037 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM4Q9C037 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC19.34■□□□□ 0.69
TRIM4Q9C037 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM4Q9C037 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
TRIM4Q9C037 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRIM4Q9C037 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.33■□□□□ 0.69
TRIM4Q9C037 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRIM4Q9C037 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
TRIM4Q9C037 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.33■□□□□ 0.69
TRIM4Q9C037 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRIM4Q9C037 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
TRIM4Q9C037 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.33■□□□□ 0.69
TRIM4Q9C037 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM4Q9C037 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
TRIM4Q9C037 AC245052.3-201ENST00000450182 901 ntBASIC19.33■□□□□ 0.68
TRIM4Q9C037 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.33■□□□□ 0.68
TRIM4Q9C037 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.33■□□□□ 0.68
TRIM4Q9C037 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM4Q9C037 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.33■□□□□ 0.68
TRIM4Q9C037 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.33■□□□□ 0.68
TRIM4Q9C037 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
TRIM4Q9C037 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM4Q9C037 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM4Q9C037 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.33■□□□□ 0.68
TRIM4Q9C037 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.33■□□□□ 0.68
TRIM4Q9C037 AC112907.3-201ENST00000577781 2400 ntBASIC19.33■□□□□ 0.68
TRIM4Q9C037 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM4Q9C037 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM4Q9C037 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM4Q9C037 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM4Q9C037 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.33■□□□□ 0.68
TRIM4Q9C037 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM4Q9C037 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM4Q9C037 AL512408.1-201ENST00000569378 2000 ntBASIC19.32■□□□□ 0.68
TRIM4Q9C037 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM4Q9C037 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM4Q9C037 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM4Q9C037 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM4Q9C037 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM4Q9C037 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM4Q9C037 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 C1QBPP2-201ENST00000528754 825 ntBASIC19.32■□□□□ 0.68
TRIM4Q9C037 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 Z99916.2-201ENST00000604037 246 ntBASIC19.32■□□□□ 0.68
TRIM4Q9C037 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM4Q9C037 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM4Q9C037 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM4Q9C037 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM4Q9C037 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM4Q9C037 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM4Q9C037 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM4Q9C037 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM4Q9C037 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM4Q9C037 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM4Q9C037 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM4Q9C037 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM4Q9C037 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM4Q9C037 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms