Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM56Q9BRZ2 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM56Q9BRZ2 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 AC116351.2-201ENST00000606540 1585 ntBASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 AL121832.2-201ENST00000610979 668 ntBASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 AC006557.6-201ENST00000623071 864 ntBASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM56Q9BRZ2 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 BX323043.1-201ENST00000641006 1765 ntBASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
TRIM56Q9BRZ2 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM56Q9BRZ2 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM56Q9BRZ2 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM56Q9BRZ2 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM56Q9BRZ2 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM56Q9BRZ2 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
TRIM56Q9BRZ2 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.78■□□□□ 0.76
TRIM56Q9BRZ2 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.78■□□□□ 0.76
TRIM56Q9BRZ2 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
TRIM56Q9BRZ2 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.78■□□□□ 0.76
TRIM56Q9BRZ2 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.78■□□□□ 0.76
TRIM56Q9BRZ2 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
TRIM56Q9BRZ2 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.78■□□□□ 0.76
TRIM56Q9BRZ2 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms