Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC25.7■■□□□ 1.7
USHBP1Q8N6Y0 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC25.7■■□□□ 1.7
USHBP1Q8N6Y0 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC25.7■■□□□ 1.7
USHBP1Q8N6Y0 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC25.7■■□□□ 1.7
USHBP1Q8N6Y0 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC25.7■■□□□ 1.7
USHBP1Q8N6Y0 GPX4-207ENST00000589115 812 ntTSL 2 BASIC25.7■■□□□ 1.7
USHBP1Q8N6Y0 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC25.7■■□□□ 1.7
USHBP1Q8N6Y0 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC25.7■■□□□ 1.7
USHBP1Q8N6Y0 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
USHBP1Q8N6Y0 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.7
USHBP1Q8N6Y0 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
USHBP1Q8N6Y0 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
USHBP1Q8N6Y0 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
USHBP1Q8N6Y0 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
USHBP1Q8N6Y0 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC25.7■■□□□ 1.7
USHBP1Q8N6Y0 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
USHBP1Q8N6Y0 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC25.69■■□□□ 1.7
USHBP1Q8N6Y0 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
USHBP1Q8N6Y0 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC25.69■■□□□ 1.7
USHBP1Q8N6Y0 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC25.69■■□□□ 1.7
USHBP1Q8N6Y0 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC25.69■■□□□ 1.7
USHBP1Q8N6Y0 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
USHBP1Q8N6Y0 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
USHBP1Q8N6Y0 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC25.69■■□□□ 1.7
USHBP1Q8N6Y0 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC25.69■■□□□ 1.7
USHBP1Q8N6Y0 CLN6-204ENST00000564752 900 ntTSL 3 BASIC25.69■■□□□ 1.7
USHBP1Q8N6Y0 AL353719.1-201ENST00000566847 864 ntBASIC25.69■■□□□ 1.7
USHBP1Q8N6Y0 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC25.69■■□□□ 1.7
USHBP1Q8N6Y0 AL023973.1-201ENST00000624619 620 ntBASIC25.69■■□□□ 1.7
USHBP1Q8N6Y0 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
USHBP1Q8N6Y0 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC25.69■■□□□ 1.7
USHBP1Q8N6Y0 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC25.68■■□□□ 1.7
USHBP1Q8N6Y0 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
USHBP1Q8N6Y0 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
USHBP1Q8N6Y0 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
USHBP1Q8N6Y0 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
USHBP1Q8N6Y0 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC25.68■■□□□ 1.7
USHBP1Q8N6Y0 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC25.68■■□□□ 1.7
USHBP1Q8N6Y0 NME1-207ENST00000480143 964 ntTSL 2 BASIC25.68■■□□□ 1.7
USHBP1Q8N6Y0 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
USHBP1Q8N6Y0 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
USHBP1Q8N6Y0 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC25.68■■□□□ 1.7
USHBP1Q8N6Y0 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC25.68■■□□□ 1.7
USHBP1Q8N6Y0 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
USHBP1Q8N6Y0 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
USHBP1Q8N6Y0 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC25.68■■□□□ 1.7
USHBP1Q8N6Y0 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
USHBP1Q8N6Y0 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
USHBP1Q8N6Y0 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC25.67■■□□□ 1.7
USHBP1Q8N6Y0 AP005212.1-201ENST00000581547 1997 ntBASIC25.67■■□□□ 1.7
USHBP1Q8N6Y0 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USHBP1Q8N6Y0 AC092667.1-201ENST00000434301 2586 ntBASIC25.67■■□□□ 1.7
USHBP1Q8N6Y0 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC25.67■■□□□ 1.7
USHBP1Q8N6Y0 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC25.67■■□□□ 1.7
USHBP1Q8N6Y0 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USHBP1Q8N6Y0 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USHBP1Q8N6Y0 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
USHBP1Q8N6Y0 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC25.67■■□□□ 1.7
USHBP1Q8N6Y0 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USHBP1Q8N6Y0 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USHBP1Q8N6Y0 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
USHBP1Q8N6Y0 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
USHBP1Q8N6Y0 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
USHBP1Q8N6Y0 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
USHBP1Q8N6Y0 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC25.67■■□□□ 1.7
USHBP1Q8N6Y0 GOLGA2P11-201ENST00000562660 1621 ntBASIC25.66■■□□□ 1.7
USHBP1Q8N6Y0 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USHBP1Q8N6Y0 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USHBP1Q8N6Y0 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USHBP1Q8N6Y0 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USHBP1Q8N6Y0 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USHBP1Q8N6Y0 TSPY17P-201ENST00000450329 467 ntBASIC25.66■■□□□ 1.7
USHBP1Q8N6Y0 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
USHBP1Q8N6Y0 AP003041.3-201ENST00000527151 707 ntBASIC25.66■■□□□ 1.7
USHBP1Q8N6Y0 CKBP1-201ENST00000565489 1086 ntBASIC25.66■■□□□ 1.7
USHBP1Q8N6Y0 AL441883.1-201ENST00000566170 1045 ntBASIC25.66■■□□□ 1.7
USHBP1Q8N6Y0 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USHBP1Q8N6Y0 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC25.66■■□□□ 1.7
USHBP1Q8N6Y0 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USHBP1Q8N6Y0 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USHBP1Q8N6Y0 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
USHBP1Q8N6Y0 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC25.66■■□□□ 1.7
USHBP1Q8N6Y0 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
USHBP1Q8N6Y0 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC25.66■■□□□ 1.7
USHBP1Q8N6Y0 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 AC092647.4-201ENST00000457211 535 ntBASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 LINC01238-205ENST00000567549 1107 ntBASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC25.65■■□□□ 1.7
USHBP1Q8N6Y0 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC25.65■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms