Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CD276-201ENST00000318424 2738 ntTSL 5 BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 AL691432.2-201ENST00000607222 2038 ntBASIC12.2□□□□□ -0.46
LINC00643Q86TS7 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 DUX4L13-201ENST00000554103 1267 ntBASIC12.19□□□□□ -0.46
LINC00643Q86TS7 DUX4L4-201ENST00000566884 1269 ntBASIC12.19□□□□□ -0.46
LINC00643Q86TS7 DUX4L15-201ENST00000611059 1267 ntBASIC12.19□□□□□ -0.46
LINC00643Q86TS7 DUX4L23-201ENST00000615195 1269 ntBASIC12.19□□□□□ -0.46
LINC00643Q86TS7 DUX4L24-201ENST00000617576 1269 ntBASIC12.19□□□□□ -0.46
LINC00643Q86TS7 DUX4L22-201ENST00000618238 1269 ntBASIC12.19□□□□□ -0.46
LINC00643Q86TS7 DUX4L20-201ENST00000619712 1269 ntBASIC12.19□□□□□ -0.46
LINC00643Q86TS7 DUX4L21-201ENST00000622058 1269 ntBASIC12.19□□□□□ -0.46
LINC00643Q86TS7 DUX4L10-201ENST00000622460 1267 ntBASIC12.19□□□□□ -0.46
LINC00643Q86TS7 DUX4L25-201ENST00000624915 1269 ntBASIC12.19□□□□□ -0.46
LINC00643Q86TS7 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
LINC00643Q86TS7 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 MADD-208ENST00000405573 1823 ntTSL 5 BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 RNF166-209ENST00000567844 633 ntTSL 5 BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 DUX4L28-201ENST00000623687 678 ntBASIC12.18□□□□□ -0.46
LINC00643Q86TS7 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
LINC00643Q86TS7 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC12.17□□□□□ -0.46
LINC00643Q86TS7 NRG1-221ENST00000614767 762 ntTSL 5 BASIC12.17□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms