Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNF111Q6ZNA4 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNF111Q6ZNA4 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNF111Q6ZNA4 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
RNF111Q6ZNA4 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.89■□□□□ 0.61
RNF111Q6ZNA4 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
RNF111Q6ZNA4 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 AC098934.4-201ENST00000564127 592 ntBASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.88■□□□□ 0.61
RNF111Q6ZNA4 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.87■□□□□ 0.61
RNF111Q6ZNA4 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF111Q6ZNA4 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF111Q6ZNA4 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF111Q6ZNA4 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
RNF111Q6ZNA4 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF111Q6ZNA4 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF111Q6ZNA4 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF111Q6ZNA4 AC073210.2-201ENST00000430369 194 ntBASIC18.87■□□□□ 0.61
RNF111Q6ZNA4 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.87■□□□□ 0.61
RNF111Q6ZNA4 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.87■□□□□ 0.61
RNF111Q6ZNA4 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.87■□□□□ 0.61
RNF111Q6ZNA4 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.87■□□□□ 0.61
RNF111Q6ZNA4 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
RNF111Q6ZNA4 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RNF111Q6ZNA4 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 AC097658.1-201ENST00000475555 843 ntBASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 AC091874.3-201ENST00000512672 1195 ntBASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RNF111Q6ZNA4 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF111Q6ZNA4 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RNF111Q6ZNA4 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RNF111Q6ZNA4 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RNF111Q6ZNA4 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RNF111Q6ZNA4 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF111Q6ZNA4 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RNF111Q6ZNA4 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.85■□□□□ 0.61
RNF111Q6ZNA4 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.85■□□□□ 0.61
RNF111Q6ZNA4 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms