Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP39Q53GS9 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.78■□□□□ 0.76
USP39Q53GS9 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP39Q53GS9 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP39Q53GS9 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP39Q53GS9 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
USP39Q53GS9 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP39Q53GS9 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP39Q53GS9 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP39Q53GS9 MESTP1-201ENST00000404287 994 ntBASIC19.78■□□□□ 0.76
USP39Q53GS9 ECEL1P2-202ENST00000465689 757 ntBASIC19.78■□□□□ 0.76
USP39Q53GS9 B3GAT3P1-201ENST00000471720 806 ntBASIC19.78■□□□□ 0.76
USP39Q53GS9 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP39Q53GS9 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.78■□□□□ 0.76
USP39Q53GS9 AC097488.1-201ENST00000507834 756 ntBASIC19.78■□□□□ 0.76
USP39Q53GS9 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.78■□□□□ 0.76
USP39Q53GS9 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP39Q53GS9 AC131212.4-201ENST00000623606 975 ntBASIC19.78■□□□□ 0.76
USP39Q53GS9 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.78■□□□□ 0.76
USP39Q53GS9 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP39Q53GS9 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.78■□□□□ 0.76
USP39Q53GS9 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP39Q53GS9 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP39Q53GS9 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.78■□□□□ 0.76
USP39Q53GS9 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP39Q53GS9 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
USP39Q53GS9 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
USP39Q53GS9 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.77■□□□□ 0.76
USP39Q53GS9 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
USP39Q53GS9 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
USP39Q53GS9 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.77■□□□□ 0.76
USP39Q53GS9 AC020907.5-201ENST00000624372 1936 ntBASIC19.77■□□□□ 0.76
USP39Q53GS9 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP39Q53GS9 CRYGFP-201ENST00000418459 633 ntBASIC19.77■□□□□ 0.76
USP39Q53GS9 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
USP39Q53GS9 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.77■□□□□ 0.76
USP39Q53GS9 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.77■□□□□ 0.76
USP39Q53GS9 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.77■□□□□ 0.76
USP39Q53GS9 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.77■□□□□ 0.76
USP39Q53GS9 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.77■□□□□ 0.76
USP39Q53GS9 WWOX-216ENST00000569818 525 ntBASIC19.77■□□□□ 0.76
USP39Q53GS9 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.77■□□□□ 0.76
USP39Q53GS9 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
USP39Q53GS9 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.77■□□□□ 0.76
USP39Q53GS9 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
USP39Q53GS9 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP39Q53GS9 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP39Q53GS9 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.77■□□□□ 0.76
USP39Q53GS9 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP39Q53GS9 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.77■□□□□ 0.76
USP39Q53GS9 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP39Q53GS9 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.77■□□□□ 0.76
USP39Q53GS9 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.77■□□□□ 0.75
USP39Q53GS9 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
USP39Q53GS9 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.76■□□□□ 0.75
USP39Q53GS9 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP39Q53GS9 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.76■□□□□ 0.75
USP39Q53GS9 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.76■□□□□ 0.75
USP39Q53GS9 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.76■□□□□ 0.75
USP39Q53GS9 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.76■□□□□ 0.75
USP39Q53GS9 FP700111.2-201ENST00000619190 1892 ntBASIC19.76■□□□□ 0.75
USP39Q53GS9 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.76■□□□□ 0.75
USP39Q53GS9 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
USP39Q53GS9 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
USP39Q53GS9 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP39Q53GS9 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
USP39Q53GS9 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
USP39Q53GS9 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.76■□□□□ 0.75
USP39Q53GS9 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USP39Q53GS9 LINC01238-205ENST00000567549 1107 ntBASIC19.76■□□□□ 0.75
USP39Q53GS9 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.76■□□□□ 0.75
USP39Q53GS9 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
USP39Q53GS9 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP39Q53GS9 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP39Q53GS9 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.76■□□□□ 0.75
USP39Q53GS9 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP39Q53GS9 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.76■□□□□ 0.75
USP39Q53GS9 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP39Q53GS9 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP39Q53GS9 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP39Q53GS9 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP39Q53GS9 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP39Q53GS9 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP39Q53GS9 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP39Q53GS9 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP39Q53GS9 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP39Q53GS9 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP39Q53GS9 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.75■□□□□ 0.75
USP39Q53GS9 BX664615.1-201ENST00000443558 458 ntBASIC19.75■□□□□ 0.75
USP39Q53GS9 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.75■□□□□ 0.75
USP39Q53GS9 AC006011.2-201ENST00000621313 1158 ntBASIC19.75■□□□□ 0.75
USP39Q53GS9 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.75■□□□□ 0.75
USP39Q53GS9 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.75■□□□□ 0.75
USP39Q53GS9 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
USP39Q53GS9 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
USP39Q53GS9 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP39Q53GS9 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
USP39Q53GS9 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.75■□□□□ 0.75
USP39Q53GS9 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
USP39Q53GS9 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms