Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.72■□□□□ 0.91
USP41Q3LFD5 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP41Q3LFD5 DUX4L26-201ENST00000489078 1255 ntBASIC20.72■□□□□ 0.91
USP41Q3LFD5 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.72■□□□□ 0.91
USP41Q3LFD5 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.72■□□□□ 0.91
USP41Q3LFD5 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP41Q3LFD5 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP41Q3LFD5 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP41Q3LFD5 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP41Q3LFD5 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP41Q3LFD5 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP41Q3LFD5 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
USP41Q3LFD5 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.71■□□□□ 0.91
USP41Q3LFD5 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.71■□□□□ 0.91
USP41Q3LFD5 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP41Q3LFD5 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP41Q3LFD5 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.71■□□□□ 0.91
USP41Q3LFD5 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP41Q3LFD5 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP41Q3LFD5 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP41Q3LFD5 INGX-201ENST00000359239 846 ntBASIC20.71■□□□□ 0.91
USP41Q3LFD5 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP41Q3LFD5 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
USP41Q3LFD5 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP41Q3LFD5 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.71■□□□□ 0.91
USP41Q3LFD5 AL160286.2-201ENST00000567150 934 ntBASIC20.71■□□□□ 0.91
USP41Q3LFD5 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.71■□□□□ 0.91
USP41Q3LFD5 FAM87A-204ENST00000613235 858 ntBASIC20.71■□□□□ 0.91
USP41Q3LFD5 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.71■□□□□ 0.91
USP41Q3LFD5 AC116562.4-202ENST00000641738 218 ntBASIC20.71■□□□□ 0.91
USP41Q3LFD5 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP41Q3LFD5 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP41Q3LFD5 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.7■□□□□ 0.91
USP41Q3LFD5 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.91
USP41Q3LFD5 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.7■□□□□ 0.9
USP41Q3LFD5 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP41Q3LFD5 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
USP41Q3LFD5 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
USP41Q3LFD5 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP41Q3LFD5 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP41Q3LFD5 CCR12P-201ENST00000446203 998 ntBASIC20.7■□□□□ 0.9
USP41Q3LFD5 TPM1-226ENST00000560959 925 ntTSL 2 BASIC20.7■□□□□ 0.9
USP41Q3LFD5 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.7■□□□□ 0.9
USP41Q3LFD5 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP41Q3LFD5 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP41Q3LFD5 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
USP41Q3LFD5 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP41Q3LFD5 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP41Q3LFD5 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.7■□□□□ 0.9
USP41Q3LFD5 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
USP41Q3LFD5 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP41Q3LFD5 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP41Q3LFD5 FEM1AP1-201ENST00000431297 1995 ntBASIC20.7■□□□□ 0.9
USP41Q3LFD5 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
USP41Q3LFD5 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP41Q3LFD5 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP41Q3LFD5 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
USP41Q3LFD5 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP41Q3LFD5 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.69■□□□□ 0.9
USP41Q3LFD5 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP41Q3LFD5 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP41Q3LFD5 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP41Q3LFD5 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.69■□□□□ 0.9
USP41Q3LFD5 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP41Q3LFD5 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP41Q3LFD5 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP41Q3LFD5 HMGA1P5-201ENST00000412453 271 ntBASIC20.69■□□□□ 0.9
USP41Q3LFD5 SLC25A1P2-201ENST00000430693 912 ntBASIC20.69■□□□□ 0.9
USP41Q3LFD5 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP41Q3LFD5 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.69■□□□□ 0.9
USP41Q3LFD5 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.69■□□□□ 0.9
USP41Q3LFD5 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.69■□□□□ 0.9
USP41Q3LFD5 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP41Q3LFD5 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.69■□□□□ 0.9
USP41Q3LFD5 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP41Q3LFD5 AC073314.1-201ENST00000568729 2216 ntBASIC20.69■□□□□ 0.9
USP41Q3LFD5 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP41Q3LFD5 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
USP41Q3LFD5 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP41Q3LFD5 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP41Q3LFD5 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP41Q3LFD5 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP41Q3LFD5 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
USP41Q3LFD5 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
USP41Q3LFD5 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
USP41Q3LFD5 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.68■□□□□ 0.9
USP41Q3LFD5 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
USP41Q3LFD5 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.68■□□□□ 0.9
USP41Q3LFD5 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
USP41Q3LFD5 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP41Q3LFD5 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.68■□□□□ 0.9
USP41Q3LFD5 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.68■□□□□ 0.9
USP41Q3LFD5 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP41Q3LFD5 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.68■□□□□ 0.9
USP41Q3LFD5 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
USP41Q3LFD5 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.68■□□□□ 0.9
USP41Q3LFD5 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
USP41Q3LFD5 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
USP41Q3LFD5 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USP41Q3LFD5 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms