Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
RFX4Q33E94 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RFX4Q33E94 BCL2-203ENST00000589955 5011 ntBASIC18.09■□□□□ 0.49
RFX4Q33E94 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.09■□□□□ 0.49
RFX4Q33E94 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
RFX4Q33E94 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
RFX4Q33E94 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.08■□□□□ 0.49
RFX4Q33E94 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
RFX4Q33E94 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.08■□□□□ 0.49
RFX4Q33E94 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
RFX4Q33E94 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
RFX4Q33E94 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
RFX4Q33E94 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
RFX4Q33E94 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
RFX4Q33E94 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
RFX4Q33E94 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RFX4Q33E94 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RFX4Q33E94 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RFX4Q33E94 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
RFX4Q33E94 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.08■□□□□ 0.48
RFX4Q33E94 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC18.08■□□□□ 0.48
RFX4Q33E94 AC007322.4-201ENST00000509611 723 ntBASIC18.08■□□□□ 0.48
RFX4Q33E94 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.08■□□□□ 0.48
RFX4Q33E94 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RFX4Q33E94 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
RFX4Q33E94 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.08■□□□□ 0.48
RFX4Q33E94 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC18.08■□□□□ 0.48
RFX4Q33E94 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
RFX4Q33E94 AL031963.3-201ENST00000606441 850 ntBASIC18.08■□□□□ 0.48
RFX4Q33E94 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC18.08■□□□□ 0.48
RFX4Q33E94 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RFX4Q33E94 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RFX4Q33E94 AL161938.1-201ENST00000569833 2180 ntBASIC18.08■□□□□ 0.48
RFX4Q33E94 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RFX4Q33E94 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.08■□□□□ 0.48
RFX4Q33E94 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
RFX4Q33E94 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RFX4Q33E94 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RFX4Q33E94 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
RFX4Q33E94 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
RFX4Q33E94 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFX4Q33E94 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFX4Q33E94 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFX4Q33E94 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFX4Q33E94 AC006333.2-201ENST00000607957 2099 ntBASIC18.07■□□□□ 0.48
RFX4Q33E94 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFX4Q33E94 AC009113.1-201ENST00000570267 2443 ntBASIC18.07■□□□□ 0.48
RFX4Q33E94 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFX4Q33E94 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFX4Q33E94 KRT18P11-201ENST00000435214 1283 ntBASIC18.07■□□□□ 0.48
RFX4Q33E94 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
RFX4Q33E94 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.07■□□□□ 0.48
RFX4Q33E94 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.07■□□□□ 0.48
RFX4Q33E94 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.07■□□□□ 0.48
RFX4Q33E94 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
RFX4Q33E94 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
RFX4Q33E94 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFX4Q33E94 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
RFX4Q33E94 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.07■□□□□ 0.48
RFX4Q33E94 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.07■□□□□ 0.48
RFX4Q33E94 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
RFX4Q33E94 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFX4Q33E94 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.07■□□□□ 0.48
RFX4Q33E94 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RFX4Q33E94 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFX4Q33E94 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFX4Q33E94 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFX4Q33E94 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFX4Q33E94 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.07■□□□□ 0.48
RFX4Q33E94 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
RFX4Q33E94 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFX4Q33E94 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RFX4Q33E94 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.06■□□□□ 0.48
RFX4Q33E94 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFX4Q33E94 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.06■□□□□ 0.48
RFX4Q33E94 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
RFX4Q33E94 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
RFX4Q33E94 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFX4Q33E94 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RFX4Q33E94 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.06■□□□□ 0.48
RFX4Q33E94 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.06■□□□□ 0.48
RFX4Q33E94 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFX4Q33E94 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFX4Q33E94 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.06■□□□□ 0.48
RFX4Q33E94 AC034268.1-201ENST00000441047 882 ntBASIC18.06■□□□□ 0.48
RFX4Q33E94 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RFX4Q33E94 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.06■□□□□ 0.48
RFX4Q33E94 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.06■□□□□ 0.48
RFX4Q33E94 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RFX4Q33E94 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.06■□□□□ 0.48
RFX4Q33E94 AC016405.3-201ENST00000607710 860 ntBASIC18.06■□□□□ 0.48
RFX4Q33E94 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
RFX4Q33E94 AC013268.1-206ENST00000638368 961 ntBASIC18.06■□□□□ 0.48
RFX4Q33E94 AC112229.1-201ENST00000639295 961 ntBASIC18.06■□□□□ 0.48
RFX4Q33E94 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFX4Q33E94 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFX4Q33E94 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFX4Q33E94 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RFX4Q33E94 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RFX4Q33E94 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms