Protein–RNA interactions for Protein: P62312

LSM6, U6 snRNA-associated Sm-like protein LSm6, humanhuman

Known RBP Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6P62312 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LSM6P62312 AC008403.3-201ENST00000598924 454 ntBASIC17.1■□□□□ 0.33
LSM6P62312 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.1■□□□□ 0.33
LSM6P62312 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LSM6P62312 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LSM6P62312 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LSM6P62312 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LSM6P62312 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LSM6P62312 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LSM6P62312 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LSM6P62312 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LSM6P62312 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LSM6P62312 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
LSM6P62312 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.09■□□□□ 0.33
LSM6P62312 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.09■□□□□ 0.33
LSM6P62312 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LSM6P62312 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.09■□□□□ 0.33
LSM6P62312 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.09■□□□□ 0.33
LSM6P62312 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.09■□□□□ 0.33
LSM6P62312 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LSM6P62312 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LSM6P62312 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LSM6P62312 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LSM6P62312 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LSM6P62312 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LSM6P62312 KRT17P3-201ENST00000420566 1262 ntBASIC17.09■□□□□ 0.33
LSM6P62312 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC17.09■□□□□ 0.33
LSM6P62312 RNA5SP413-201ENST00000516373 109 ntBASIC17.09■□□□□ 0.33
LSM6P62312 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.09■□□□□ 0.33
LSM6P62312 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.09■□□□□ 0.33
LSM6P62312 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
LSM6P62312 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
LSM6P62312 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
LSM6P62312 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LSM6P62312 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.09■□□□□ 0.33
LSM6P62312 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LSM6P62312 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
LSM6P62312 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LSM6P62312 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.09■□□□□ 0.33
LSM6P62312 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.09■□□□□ 0.33
LSM6P62312 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LSM6P62312 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
LSM6P62312 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
LSM6P62312 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LSM6P62312 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
LSM6P62312 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
LSM6P62312 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
LSM6P62312 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
LSM6P62312 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LSM6P62312 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.08■□□□□ 0.33
LSM6P62312 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
LSM6P62312 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LSM6P62312 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
LSM6P62312 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LSM6P62312 AC026366.1-201ENST00000488803 879 ntBASIC17.08■□□□□ 0.32
LSM6P62312 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.08■□□□□ 0.32
LSM6P62312 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.08■□□□□ 0.32
LSM6P62312 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.08■□□□□ 0.32
LSM6P62312 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LSM6P62312 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LSM6P62312 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
LSM6P62312 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LSM6P62312 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LSM6P62312 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.08■□□□□ 0.32
LSM6P62312 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LSM6P62312 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LSM6P62312 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.07■□□□□ 0.32
LSM6P62312 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.07■□□□□ 0.32
LSM6P62312 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.07■□□□□ 0.32
LSM6P62312 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM6P62312 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM6P62312 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
LSM6P62312 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM6P62312 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
LSM6P62312 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.07■□□□□ 0.32
LSM6P62312 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.07■□□□□ 0.32
LSM6P62312 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LSM6P62312 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.07■□□□□ 0.32
LSM6P62312 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.07■□□□□ 0.32
LSM6P62312 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LSM6P62312 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.07■□□□□ 0.32
LSM6P62312 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
LSM6P62312 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.07■□□□□ 0.32
LSM6P62312 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC17.07■□□□□ 0.32
LSM6P62312 KRT18P6-201ENST00000555540 1265 ntBASIC17.07■□□□□ 0.32
LSM6P62312 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.07■□□□□ 0.32
LSM6P62312 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LSM6P62312 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.07■□□□□ 0.32
LSM6P62312 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
LSM6P62312 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM6P62312 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LSM6P62312 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM6P62312 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM6P62312 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LSM6P62312 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.07■□□□□ 0.32
LSM6P62312 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.07■□□□□ 0.32
LSM6P62312 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.07■□□□□ 0.32
LSM6P62312 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LSM6P62312 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
LSM6P62312 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms