Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.33■□□□□ 0.85
HDAC4P56524 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
HDAC4P56524 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
HDAC4P56524 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
HDAC4P56524 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
HDAC4P56524 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HDAC4P56524 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.33■□□□□ 0.85
HDAC4P56524 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.85
HDAC4P56524 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.33■□□□□ 0.85
HDAC4P56524 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HDAC4P56524 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
HDAC4P56524 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
HDAC4P56524 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HDAC4P56524 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
HDAC4P56524 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.84
HDAC4P56524 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
HDAC4P56524 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.33■□□□□ 0.84
HDAC4P56524 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
HDAC4P56524 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
HDAC4P56524 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HDAC4P56524 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
HDAC4P56524 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HDAC4P56524 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.32■□□□□ 0.84
HDAC4P56524 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HDAC4P56524 FAM201B-201ENST00000458407 597 ntBASIC20.32■□□□□ 0.84
HDAC4P56524 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.32■□□□□ 0.84
HDAC4P56524 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.32■□□□□ 0.84
HDAC4P56524 AC124016.1-201ENST00000609552 612 ntBASIC20.32■□□□□ 0.84
HDAC4P56524 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.32■□□□□ 0.84
HDAC4P56524 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.32■□□□□ 0.84
HDAC4P56524 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HDAC4P56524 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HDAC4P56524 KRT8P8-201ENST00000434750 1448 ntBASIC20.32■□□□□ 0.84
HDAC4P56524 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HDAC4P56524 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HDAC4P56524 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HDAC4P56524 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.32■□□□□ 0.84
HDAC4P56524 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HDAC4P56524 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.32■□□□□ 0.84
HDAC4P56524 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC4P56524 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC4P56524 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC4P56524 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC4P56524 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC4P56524 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC4P56524 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
HDAC4P56524 KRASP1-201ENST00000407852 552 ntBASIC20.31■□□□□ 0.84
HDAC4P56524 AC239809.2-201ENST00000415381 517 ntBASIC20.31■□□□□ 0.84
HDAC4P56524 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.31■□□□□ 0.84
HDAC4P56524 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC4P56524 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
HDAC4P56524 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC4P56524 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
HDAC4P56524 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.31■□□□□ 0.84
HDAC4P56524 ITM2C-210ENST00000620962 501 ntBASIC20.31■□□□□ 0.84
HDAC4P56524 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC4P56524 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC20.31■□□□□ 0.84
HDAC4P56524 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC4P56524 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC4P56524 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC4P56524 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC4P56524 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC4P56524 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HDAC4P56524 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
HDAC4P56524 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HDAC4P56524 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
HDAC4P56524 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.3■□□□□ 0.84
HDAC4P56524 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HDAC4P56524 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.3■□□□□ 0.84
HDAC4P56524 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.3■□□□□ 0.84
HDAC4P56524 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HDAC4P56524 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HDAC4P56524 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
HDAC4P56524 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.3■□□□□ 0.84
HDAC4P56524 TUBB8P6-201ENST00000436895 1288 ntBASIC20.3■□□□□ 0.84
HDAC4P56524 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.3■□□□□ 0.84
HDAC4P56524 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.3■□□□□ 0.84
HDAC4P56524 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.3■□□□□ 0.84
HDAC4P56524 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.3■□□□□ 0.84
HDAC4P56524 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.3■□□□□ 0.84
HDAC4P56524 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.3■□□□□ 0.84
HDAC4P56524 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HDAC4P56524 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.3■□□□□ 0.84
HDAC4P56524 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
HDAC4P56524 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.29■□□□□ 0.84
HDAC4P56524 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC4P56524 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.29■□□□□ 0.84
HDAC4P56524 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.29■□□□□ 0.84
HDAC4P56524 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC4P56524 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
HDAC4P56524 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC4P56524 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC4P56524 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.29■□□□□ 0.84
HDAC4P56524 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.29■□□□□ 0.84
HDAC4P56524 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HDAC4P56524 AC133681.1-201ENST00000465482 601 ntBASIC20.29■□□□□ 0.84
HDAC4P56524 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.29■□□□□ 0.84
HDAC4P56524 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.29■□□□□ 0.84
HDAC4P56524 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.29■□□□□ 0.84
HDAC4P56524 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms