Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
COL18A1P39060 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
COL18A1P39060 TBC1D3P2-202ENST00000577902 1649 ntBASIC25.82■■□□□ 1.72
COL18A1P39060 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
COL18A1P39060 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
COL18A1P39060 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
COL18A1P39060 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC25.82■■□□□ 1.72
COL18A1P39060 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC25.82■■□□□ 1.72
COL18A1P39060 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC25.82■■□□□ 1.72
COL18A1P39060 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
COL18A1P39060 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC25.82■■□□□ 1.72
COL18A1P39060 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC25.82■■□□□ 1.72
COL18A1P39060 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC25.82■■□□□ 1.72
COL18A1P39060 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC25.81■■□□□ 1.72
COL18A1P39060 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC25.81■■□□□ 1.72
COL18A1P39060 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC25.81■■□□□ 1.72
COL18A1P39060 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
COL18A1P39060 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC25.81■■□□□ 1.72
COL18A1P39060 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC25.81■■□□□ 1.72
COL18A1P39060 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC25.81■■□□□ 1.72
COL18A1P39060 HBZP1-201ENST00000354915 429 ntBASIC25.81■■□□□ 1.72
COL18A1P39060 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC25.81■■□□□ 1.72
COL18A1P39060 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC25.81■■□□□ 1.72
COL18A1P39060 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
COL18A1P39060 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
COL18A1P39060 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
COL18A1P39060 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC25.81■■□□□ 1.72
COL18A1P39060 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC25.81■■□□□ 1.72
COL18A1P39060 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
COL18A1P39060 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
COL18A1P39060 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC25.8■■□□□ 1.72
COL18A1P39060 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
COL18A1P39060 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
COL18A1P39060 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
COL18A1P39060 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC25.8■■□□□ 1.72
COL18A1P39060 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC25.8■■□□□ 1.72
COL18A1P39060 AC133561.1-201ENST00000568600 2415 ntBASIC25.8■■□□□ 1.72
COL18A1P39060 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC25.8■■□□□ 1.72
COL18A1P39060 GCSHP2-201ENST00000560971 527 ntBASIC25.8■■□□□ 1.72
COL18A1P39060 MIR4674-201ENST00000582457 87 ntBASIC25.8■■□□□ 1.72
COL18A1P39060 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC25.8■■□□□ 1.72
COL18A1P39060 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC25.8■■□□□ 1.72
COL18A1P39060 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC25.8■■□□□ 1.72
COL18A1P39060 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC25.8■■□□□ 1.72
COL18A1P39060 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC25.8■■□□□ 1.72
COL18A1P39060 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC25.8■■□□□ 1.72
COL18A1P39060 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
COL18A1P39060 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
COL18A1P39060 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC25.79■■□□□ 1.72
COL18A1P39060 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC25.79■■□□□ 1.72
COL18A1P39060 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC25.79■■□□□ 1.72
COL18A1P39060 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
COL18A1P39060 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
COL18A1P39060 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC25.79■■□□□ 1.72
COL18A1P39060 STK25-234ENST00000535007 2459 ntTSL 2 BASIC25.79■■□□□ 1.72
COL18A1P39060 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
COL18A1P39060 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
COL18A1P39060 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
COL18A1P39060 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
COL18A1P39060 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC25.79■■□□□ 1.72
COL18A1P39060 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
COL18A1P39060 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC25.79■■□□□ 1.72
COL18A1P39060 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
COL18A1P39060 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC25.79■■□□□ 1.72
COL18A1P39060 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC25.79■■□□□ 1.72
COL18A1P39060 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
COL18A1P39060 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC25.79■■□□□ 1.72
COL18A1P39060 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC25.78■■□□□ 1.72
COL18A1P39060 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC25.78■■□□□ 1.72
COL18A1P39060 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC25.78■■□□□ 1.72
COL18A1P39060 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC25.78■■□□□ 1.72
COL18A1P39060 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
COL18A1P39060 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC25.78■■□□□ 1.72
COL18A1P39060 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
COL18A1P39060 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC25.78■■□□□ 1.72
COL18A1P39060 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
COL18A1P39060 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC25.78■■□□□ 1.72
COL18A1P39060 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
COL18A1P39060 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC25.78■■□□□ 1.72
COL18A1P39060 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC25.77■■□□□ 1.72
COL18A1P39060 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
COL18A1P39060 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC25.77■■□□□ 1.72
COL18A1P39060 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC25.77■■□□□ 1.72
COL18A1P39060 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC25.77■■□□□ 1.72
COL18A1P39060 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
COL18A1P39060 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC25.77■■□□□ 1.72
COL18A1P39060 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC25.77■■□□□ 1.72
COL18A1P39060 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
COL18A1P39060 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
COL18A1P39060 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
COL18A1P39060 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC25.77■■□□□ 1.72
COL18A1P39060 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
COL18A1P39060 AC026396.1-201ENST00000419388 421 ntBASIC25.77■■□□□ 1.72
COL18A1P39060 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
COL18A1P39060 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC25.77■■□□□ 1.72
COL18A1P39060 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC25.77■■□□□ 1.72
COL18A1P39060 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC25.77■■□□□ 1.72
COL18A1P39060 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC25.77■■□□□ 1.72
COL18A1P39060 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC25.76■■□□□ 1.72
COL18A1P39060 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC25.76■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms