Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
COL6A2P12110 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.22■□□□□ 0.67
COL6A2P12110 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
COL6A2P12110 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A2P12110 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A2P12110 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A2P12110 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A2P12110 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A2P12110 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
COL6A2P12110 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.22■□□□□ 0.67
COL6A2P12110 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.22■□□□□ 0.67
COL6A2P12110 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.22■□□□□ 0.67
COL6A2P12110 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.22■□□□□ 0.67
COL6A2P12110 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.22■□□□□ 0.67
COL6A2P12110 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
COL6A2P12110 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A2P12110 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A2P12110 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A2P12110 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.22■□□□□ 0.67
COL6A2P12110 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A2P12110 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A2P12110 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A2P12110 TEX21P-204ENST00000641479 1693 ntBASIC19.21■□□□□ 0.67
COL6A2P12110 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
COL6A2P12110 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A2P12110 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A2P12110 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A2P12110 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.21■□□□□ 0.67
COL6A2P12110 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A2P12110 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A2P12110 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A2P12110 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.21■□□□□ 0.67
COL6A2P12110 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A2P12110 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.21■□□□□ 0.67
COL6A2P12110 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A2P12110 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.21■□□□□ 0.67
COL6A2P12110 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.21■□□□□ 0.67
COL6A2P12110 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A2P12110 RAP2CP1-201ENST00000605103 478 ntBASIC19.21■□□□□ 0.67
COL6A2P12110 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.21■□□□□ 0.67
COL6A2P12110 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.21■□□□□ 0.67
COL6A2P12110 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A2P12110 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
COL6A2P12110 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A2P12110 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
COL6A2P12110 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A2P12110 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.21■□□□□ 0.67
COL6A2P12110 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A2P12110 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
COL6A2P12110 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
COL6A2P12110 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A2P12110 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.2■□□□□ 0.66
COL6A2P12110 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A2P12110 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A2P12110 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.2■□□□□ 0.66
COL6A2P12110 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A2P12110 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A2P12110 CROCCP3-202ENST00000420820 1947 ntBASIC19.2■□□□□ 0.66
COL6A2P12110 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A2P12110 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.2■□□□□ 0.66
COL6A2P12110 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A2P12110 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A2P12110 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.2■□□□□ 0.66
COL6A2P12110 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A2P12110 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
COL6A2P12110 CDCA4P2-201ENST00000441182 718 ntBASIC19.2■□□□□ 0.66
COL6A2P12110 AC026185.1-201ENST00000445748 174 ntBASIC19.2■□□□□ 0.66
COL6A2P12110 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.2■□□□□ 0.66
COL6A2P12110 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.2■□□□□ 0.66
COL6A2P12110 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A2P12110 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.2■□□□□ 0.66
COL6A2P12110 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.2■□□□□ 0.66
COL6A2P12110 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A2P12110 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A2P12110 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A2P12110 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A2P12110 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A2P12110 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A2P12110 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
COL6A2P12110 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A2P12110 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.19■□□□□ 0.66
COL6A2P12110 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A2P12110 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.19■□□□□ 0.66
COL6A2P12110 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A2P12110 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A2P12110 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.19■□□□□ 0.66
COL6A2P12110 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.19■□□□□ 0.66
COL6A2P12110 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.19■□□□□ 0.66
COL6A2P12110 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.19■□□□□ 0.66
COL6A2P12110 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.19■□□□□ 0.66
COL6A2P12110 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.19■□□□□ 0.66
COL6A2P12110 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
COL6A2P12110 AC092437.1-201ENST00000624794 1048 ntBASIC19.19■□□□□ 0.66
COL6A2P12110 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.19■□□□□ 0.66
COL6A2P12110 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A2P12110 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.19■□□□□ 0.66
COL6A2P12110 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A2P12110 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A2P12110 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.19■□□□□ 0.66
COL6A2P12110 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms