Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AC125437.2-201ENST00000625180 2167 ntBASIC20.39■□□□□ 0.85
APOEP02649 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
APOEP02649 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
APOEP02649 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.39■□□□□ 0.85
APOEP02649 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
APOEP02649 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.39■□□□□ 0.85
APOEP02649 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
APOEP02649 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
APOEP02649 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.39■□□□□ 0.85
APOEP02649 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
APOEP02649 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
APOEP02649 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
APOEP02649 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.38■□□□□ 0.85
APOEP02649 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
APOEP02649 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
APOEP02649 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.38■□□□□ 0.85
APOEP02649 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
APOEP02649 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.38■□□□□ 0.85
APOEP02649 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
APOEP02649 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
APOEP02649 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
APOEP02649 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
APOEP02649 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.38■□□□□ 0.85
APOEP02649 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.38■□□□□ 0.85
APOEP02649 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
APOEP02649 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.38■□□□□ 0.85
APOEP02649 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
APOEP02649 AC066615.1-201ENST00000640911 628 ntBASIC20.38■□□□□ 0.85
APOEP02649 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.38■□□□□ 0.85
APOEP02649 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
APOEP02649 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
APOEP02649 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
APOEP02649 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.38■□□□□ 0.85
APOEP02649 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.38■□□□□ 0.85
APOEP02649 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
APOEP02649 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
APOEP02649 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.38■□□□□ 0.85
APOEP02649 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
APOEP02649 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
APOEP02649 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
APOEP02649 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.37■□□□□ 0.85
APOEP02649 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
APOEP02649 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
APOEP02649 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
APOEP02649 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.37■□□□□ 0.85
APOEP02649 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
APOEP02649 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
APOEP02649 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
APOEP02649 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
APOEP02649 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.37■□□□□ 0.85
APOEP02649 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
APOEP02649 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
APOEP02649 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
APOEP02649 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.37■□□□□ 0.85
APOEP02649 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.37■□□□□ 0.85
APOEP02649 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.37■□□□□ 0.85
APOEP02649 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
APOEP02649 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.37■□□□□ 0.85
APOEP02649 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.37■□□□□ 0.85
APOEP02649 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.37■□□□□ 0.85
APOEP02649 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
APOEP02649 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
APOEP02649 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
APOEP02649 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
APOEP02649 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
APOEP02649 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
APOEP02649 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
APOEP02649 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.36■□□□□ 0.85
APOEP02649 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
APOEP02649 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
APOEP02649 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
APOEP02649 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
APOEP02649 TMEM179-206ENST00000616017 1645 ntBASIC20.36■□□□□ 0.85
APOEP02649 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
APOEP02649 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
APOEP02649 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
APOEP02649 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
APOEP02649 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
APOEP02649 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.36■□□□□ 0.85
APOEP02649 TUBB8P6-201ENST00000436895 1288 ntBASIC20.36■□□□□ 0.85
APOEP02649 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.36■□□□□ 0.85
APOEP02649 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.36■□□□□ 0.85
APOEP02649 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.36■□□□□ 0.85
APOEP02649 AC008550.1-201ENST00000511500 884 ntBASIC20.36■□□□□ 0.85
APOEP02649 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
APOEP02649 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.36■□□□□ 0.85
APOEP02649 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.36■□□□□ 0.85
APOEP02649 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
APOEP02649 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.36■□□□□ 0.85
APOEP02649 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
APOEP02649 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
APOEP02649 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
APOEP02649 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
APOEP02649 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.36■□□□□ 0.85
APOEP02649 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
APOEP02649 AL135905.2-201ENST00000584934 1404 ntBASIC20.36■□□□□ 0.85
APOEP02649 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
APOEP02649 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
APOEP02649 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.35■□□□□ 0.85
APOEP02649 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms