Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 LINC01568-207ENST00000641790 1380 ntBASIC15.87■□□□□ 0.13
TRAV40A0A0B4J280 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 KRT8P8-201ENST00000434750 1448 ntBASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 MESTP1-201ENST00000404287 994 ntBASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TRAV40A0A0B4J280 AC092667.1-201ENST00000434301 2586 ntBASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 AL691432.2-201ENST00000607222 2038 ntBASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 GABARAPL3-202ENST00000624044 1851 ntBASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 RCN1P1-201ENST00000400413 996 ntBASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 AC011506.1-201ENST00000474329 610 ntBASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 AC010331.1-201ENST00000611423 582 ntBASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV40A0A0B4J280 CYP2D8P-201ENST00000433633 1490 ntBASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 TMPOP1-202ENST00000424642 1267 ntBASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 RN7SL850P-201ENST00000579959 291 ntBASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 AC011298.2-201ENST00000617989 482 ntBASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 AC005363.2-201ENST00000618631 242 ntBASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV40A0A0B4J280 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRAV40A0A0B4J280 RCC2P6-201ENST00000526625 1557 ntBASIC15.83■□□□□ 0.13
TRAV40A0A0B4J280 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.13
TRAV40A0A0B4J280 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRAV40A0A0B4J280 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRAV40A0A0B4J280 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRAV40A0A0B4J280 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms