Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 DAZAP2-210ENST00000551313 587 ntTSL 3 BASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 AC130289.1-201ENST00000577321 73 ntBASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 RN7SL376P-201ENST00000578594 264 ntBASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 AC104662.1-201ENST00000604448 511 ntBASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 AL008729.2-201ENST00000606393 473 ntBASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 AL391813.2-201ENST00000609113 322 ntBASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 RN7SL3-201ENST00000610674 299 ntBASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 MIR6762-201ENST00000613340 86 ntBASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 CR392039.3-201ENST00000623236 227 ntTSL 5 BASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 BANCR-201ENST00000624238 473 ntTSL 2 BASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 AC073488.2-201ENST00000631903 751 ntBASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 ATP2C1-208ENST00000504948 4714 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 DNMBP-203ENST00000543621 4178 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 HELLS-206ENST00000394045 2699 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 SOX6-211ENST00000528429 2656 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 AC061975.7-201ENST00000592016 2692 ntBASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 PSG5-202ENST00000366175 1766 ntTSL 5 BASIC7.64□□□□□ -1.19
VPS9D1Q9Y2B5 NCALD-201ENST00000220931 3283 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 ASCC1-201ENST00000317126 1501 ntAPPRIS P1 TSL 2 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 ALB-203ENST00000415165 1483 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 RSPH4A-201ENST00000229554 2825 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 KIAA0753-207ENST00000572370 3263 ntAPPRIS ALT2 TSL 2 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 Y_RNA.209-201ENST00000364156 111 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 RNU6-115P-201ENST00000364310 107 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 SNORD116-11-201ENST00000383882 92 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 AL353151.1-201ENST00000402406 604 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 AC064874.1-201ENST00000409661 441 ntTSL 3 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 RNU2-71P-201ENST00000411395 189 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 BCRP8-201ENST00000412037 255 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 AC093642.1-201ENST00000412193 565 ntTSL 3 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 CYTOR-207ENST00000414584 772 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 RPL19P21-201ENST00000424919 591 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 OR4K11P-201ENST00000431829 904 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 HMGN2P24-201ENST00000433516 273 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 RPL7P28-201ENST00000437739 740 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 AL135929.1-201ENST00000449287 552 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 AL031736.1-201ENST00000449688 618 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 OR52I1-201ENST00000450052 1050 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 HMGB3P30-201ENST00000457863 606 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 RPS27P23-201ENST00000487608 251 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 AC079768.1-201ENST00000503181 711 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 STX18-IT1-201ENST00000515487 542 ntTSL 4 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 SCARNA20.1-201ENST00000516009 138 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 RNA5SP422-201ENST00000516778 111 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 HAUS8P1-201ENST00000549005 542 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 RPL3P13-201ENST00000550415 216 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 OR4K8P-201ENST00000578842 1048 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 AC010620.2-201ENST00000600135 313 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 AL096855.2-201ENST00000605785 369 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 AC006547.1-211ENST00000609191 828 ntTSL 5 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 AL606534.2-204ENST00000635008 178 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 OPALIN-206ENST00000611913 3115 ntTSL 5 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 LINC01060-204ENST00000510832 2435 ntTSL 2 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 VRK2-203ENST00000417641 2381 ntAPPRIS ALT2 TSL 2 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 LDHA-204ENST00000396222 1766 ntTSL 2 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 PDE1A-201ENST00000351439 2338 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 ZNF271P-201ENST00000399070 5124 ntTSL 2 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 MYOCD-201ENST00000343344 2817 ntAPPRIS P3 TSL 1 (best) BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 HDAC9-201ENST00000401921 3254 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 CDY1-202ENST00000361963 2177 ntAPPRIS P1 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 SOCS5P3-201ENST00000425115 1576 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 AC130360.2-201ENST00000533477 1556 ntBASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 FBXO36-202ENST00000373652 3120 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 PPP6C-201ENST00000373547 4118 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
VPS9D1Q9Y2B5 MTCO1P7-201ENST00000419523 1542 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 MAP2-203ENST00000361559 2038 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 NQO1-203ENST00000379047 2527 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 KPNA1-201ENST00000344337 6830 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 AC097504.1-201ENST00000515103 2415 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 PPP6R3-206ENST00000524904 4292 ntAPPRIS ALT1 TSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 VMA21-201ENST00000330374 4717 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 CNOT4-201ENST00000315544 3783 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 PGM3-212ENST00000513973 6107 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 IQCA1-204ENST00000409907 3281 ntAPPRIS P3 TSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 THAP12P7-201ENST00000520248 2290 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 CAP1-206ENST00000372805 2217 ntAPPRIS P3 TSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 TM4SF1-201ENST00000305366 1771 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms