Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA1P49639 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.43□□□□□ -1.7
HOXA1P49639 AC104966.1-201ENST00000467010 1464 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA1P49639 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXA1P49639 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
HOXA1P49639 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
HOXA1P49639 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
HOXA1P49639 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA1P49639 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC4.42□□□□□ -1.7
HOXA1P49639 AL034374.1-201ENST00000406329 351 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 UBE2V1P11-201ENST00000411559 285 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 RPL12P9-201ENST00000412942 488 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXA1P49639 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA1P49639 EIF4A1P1-201ENST00000420241 934 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AC246680.2-201ENST00000422106 389 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 XKRYP1-201ENST00000423438 492 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC4.42□□□□□ -1.7
HOXA1P49639 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXA1P49639 DPY19L1P2-201ENST00000426647 915 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 RPS4XP16-201ENST00000427198 791 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.42□□□□□ -1.7
HOXA1P49639 AL022331.1-201ENST00000429025 477 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 CETN4P-201ENST00000432407 469 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
HOXA1P49639 XKRYP2-201ENST00000432915 492 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AC006335.2-201ENST00000437993 330 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXA1P49639 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXA1P49639 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC4.42□□□□□ -1.7
HOXA1P49639 BTF3P6-201ENST00000448054 499 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 GAS5-218ENST00000448718 565 ntTSL 2 BASIC4.42□□□□□ -1.7
HOXA1P49639 MTCO1P18-201ENST00000455518 1419 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 GTF2IP12-201ENST00000456547 356 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 CYCSP34-201ENST00000458172 304 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA1P49639 AC087672.1-201ENST00000479876 766 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 UBA52P3-201ENST00000491303 382 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AL117692.1-201ENST00000494283 713 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AC134050.1-201ENST00000495088 933 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA1P49639 NENFP3-201ENST00000503735 313 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXA1P49639 AC092349.1-201ENST00000504903 310 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXA1P49639 PRELID3BP5-201ENST00000508612 460 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AC091912.1-201ENST00000511351 248 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 HMGN1P9-201ENST00000515212 298 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXA1P49639 MTND2P38-201ENST00000522536 667 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXA1P49639 AC084121.1-201ENST00000533882 835 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXA1P49639 AC087897.1-201ENST00000550134 156 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AC068305.2-201ENST00000550567 1205 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
HOXA1P49639 CYCSP38-201ENST00000559840 322 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXA1P49639 AC027455.1-201ENST00000574104 594 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXA1P49639 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXA1P49639 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
HOXA1P49639 VN1R87P-201ENST00000596706 487 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXA1P49639 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXA1P49639 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXA1P49639 AC009779.8-202ENST00000607990 932 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AL135786.2-201ENST00000608422 615 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AC097505.1-201ENST00000610199 565 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA1P49639 AC073569.3-201ENST00000619055 682 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AC011330.2-201ENST00000621680 635 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AP000648.2-201ENST00000624182 404 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AC073592.6-201ENST00000624271 415 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AC012020.1-201ENST00000624541 1728 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AC019226.2-201ENST00000625973 424 ntBASIC4.42□□□□□ -1.7
HOXA1P49639 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXA1P49639 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA1P49639 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
HOXA1P49639 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA1P49639 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA1P49639 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA1P49639 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.42□□□□□ -1.7
HOXA1P49639 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXA1P49639 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
HOXA1P49639 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
HOXA1P49639 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA1P49639 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA1P49639 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC4.42□□□□□ -1.7
HOXA1P49639 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC4.42□□□□□ -1.7
HOXA1P49639 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA1P49639 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
HOXA1P49639 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
HOXA1P49639 AL356489.2-201ENST00000566968 3528 ntBASIC4.41□□□□□ -1.7
HOXA1P49639 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
HOXA1P49639 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA1P49639 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms