Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ENO1P4-201ENST00000416471 1785 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC6.27□□□□□ -1.41
COL8A1P27658 USPL1-201ENST00000255304 3814 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL8A1P27658 DEFB124-201ENST00000317676 216 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL8A1P27658 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL8A1P27658 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL8A1P27658 RNA5SP433-201ENST00000364491 114 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 RNU6-26P-201ENST00000383985 107 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 Y_RNA.447-201ENST00000384184 113 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 MIR16-1-201ENST00000385271 89 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
COL8A1P27658 AL359634.1-202ENST00000404721 284 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 SNORA3.1-201ENST00000408166 111 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 AC068138.1-201ENST00000412635 217 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC6.27□□□□□ -1.41
COL8A1P27658 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC6.27□□□□□ -1.41
COL8A1P27658 CHEK2P3-201ENST00000416118 248 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 VDAC1P10-201ENST00000416715 891 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 MCFD2P1-201ENST00000417812 300 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 DPH3P2-201ENST00000422618 250 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 IGKV1OR9-1-201ENST00000424370 284 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC6.27□□□□□ -1.41
COL8A1P27658 ARL5AP4-201ENST00000430731 512 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 FTH1P20-201ENST00000434913 548 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC6.27□□□□□ -1.41
COL8A1P27658 BNIP3P2-201ENST00000441221 577 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 PXT1-201ENST00000454782 2108 ntAPPRIS P2 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL8A1P27658 RPL18AP17-201ENST00000455326 198 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 AC002368.1-201ENST00000456981 388 ntTSL 3 BASIC6.27□□□□□ -1.41
COL8A1P27658 RN7SL492P-201ENST00000460700 295 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC6.27□□□□□ -1.41
COL8A1P27658 RN7SL306P-201ENST00000492941 296 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 AC015911.1-201ENST00000495111 156 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 RN7SL775P-201ENST00000498361 336 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 AC104109.1-201ENST00000498563 436 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 EIF4EP3-201ENST00000498782 656 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC6.27□□□□□ -1.41
COL8A1P27658 AC018797.1-201ENST00000510791 255 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC6.27□□□□□ -1.41
COL8A1P27658 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC6.27□□□□□ -1.41
COL8A1P27658 RNU6-416P-201ENST00000516265 103 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 SNORA48.10-201ENST00000516965 160 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC6.27□□□□□ -1.41
COL8A1P27658 AC018992.1-201ENST00000523778 2149 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 RGS4-209ENST00000531057 544 ntTSL 4 BASIC6.27□□□□□ -1.41
COL8A1P27658 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC6.27□□□□□ -1.41
COL8A1P27658 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC6.27□□□□□ -1.41
COL8A1P27658 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC6.27□□□□□ -1.41
COL8A1P27658 AL389895.1-201ENST00000554127 252 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC6.27□□□□□ -1.41
COL8A1P27658 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC6.27□□□□□ -1.41
COL8A1P27658 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC6.27□□□□□ -1.41
COL8A1P27658 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC6.27□□□□□ -1.41
COL8A1P27658 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC6.27□□□□□ -1.41
COL8A1P27658 RPS11-202ENST00000594493 575 ntTSL 3 BASIC6.27□□□□□ -1.41
COL8A1P27658 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC6.27□□□□□ -1.41
COL8A1P27658 U2.1-201ENST00000618978 145 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 AC009161.2-201ENST00000624626 138 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC6.27□□□□□ -1.41
COL8A1P27658 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC6.27□□□□□ -1.41
COL8A1P27658 FBXO7-202ENST00000397426 1888 ntTSL 2 BASIC6.27□□□□□ -1.41
COL8A1P27658 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC6.27□□□□□ -1.41
COL8A1P27658 OR2H2-202ENST00000641840 3061 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
COL8A1P27658 TMX2-201ENST00000278422 1631 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL8A1P27658 PTBP3-204ENST00000374255 3413 ntAPPRIS P3 TSL 5 BASIC6.27□□□□□ -1.41
COL8A1P27658 GJC1-202ENST00000426548 7640 ntAPPRIS P1 TSL 3 BASIC6.27□□□□□ -1.41
COL8A1P27658 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL8A1P27658 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC6.27□□□□□ -1.41
COL8A1P27658 AC027097.2-201ENST00000588925 1976 ntTSL 2 BASIC6.27□□□□□ -1.41
COL8A1P27658 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL8A1P27658 LRRC31-204ENST00000523069 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL8A1P27658 RIPOR2-205ENST00000510784 3381 ntTSL 2 BASIC6.27□□□□□ -1.41
COL8A1P27658 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC6.27□□□□□ -1.41
COL8A1P27658 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL8A1P27658 AP000866.1-202ENST00000529392 2792 ntTSL 2 BASIC6.27□□□□□ -1.41
COL8A1P27658 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL8A1P27658 CTH-202ENST00000370938 1805 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL8A1P27658 RFX5-201ENST00000290524 3576 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL8A1P27658 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL8A1P27658 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL8A1P27658 OR2T11-202ENST00000641193 3770 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
COL8A1P27658 AC245177.1-201ENST00000375625 2369 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL8A1P27658 AC239585.1-201ENST00000375644 2369 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL8A1P27658 VRK2-203ENST00000417641 2381 ntAPPRIS ALT2 TSL 2 BASIC6.26□□□□□ -1.41
COL8A1P27658 HNRNPU-223ENST00000640001 4227 ntTSL 5 BASIC6.26□□□□□ -1.41
COL8A1P27658 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL8A1P27658 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
COL8A1P27658 BRD8-201ENST00000230901 3198 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL8A1P27658 TAT-201ENST00000355962 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL8A1P27658 AC084782.1-201ENST00000564401 2465 ntBASIC6.26□□□□□ -1.41
COL8A1P27658 HAVCR2-201ENST00000307851 2907 ntAPPRIS P2 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL8A1P27658 NPIPB5-205ENST00000424340 3801 ntAPPRIS P2 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL8A1P27658 AC020904.2-202ENST00000614660 1401 ntBASIC6.26□□□□□ -1.41
COL8A1P27658 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL8A1P27658 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
COL8A1P27658 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL8A1P27658 CDY1-201ENST00000306609 2321 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL8A1P27658 CDY1B-201ENST00000306882 2321 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL8A1P27658 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC6.26□□□□□ -1.41
COL8A1P27658 KLHL32-202ENST00000369261 3698 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms