Protein–RNA interactions for Protein: P31277

HOXD11, Homeobox protein Hox-D11, humanhuman

Predicted RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11P31277 AP002892.2-201ENST00000544195 560 ntTSL 4 BASIC9.36□□□□□ -0.91
HOXD11P31277 RN7SL783P-201ENST00000577950 301 ntBASIC9.36□□□□□ -0.91
HOXD11P31277 KIR3DP1-201ENST00000580853 628 ntBASIC9.36□□□□□ -0.91
HOXD11P31277 AC060766.3-201ENST00000591442 263 ntBASIC9.36□□□□□ -0.91
HOXD11P31277 AC008635.1-201ENST00000600716 562 ntTSL 4 BASIC9.36□□□□□ -0.91
HOXD11P31277 VDAC1P8-210ENST00000610068 1251 ntTSL 5 BASIC9.36□□□□□ -0.91
HOXD11P31277 AC109309.2-201ENST00000612597 332 ntBASIC9.36□□□□□ -0.91
HOXD11P31277 Metazoa_SRP.176-201ENST00000619772 282 ntBASIC9.36□□□□□ -0.91
HOXD11P31277 AC244517.10-201ENST00000624396 548 ntAPPRIS P1 TSL 4 BASIC9.36□□□□□ -0.91
HOXD11P31277 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
HOXD11P31277 POLR2D-203ENST00000409955 1758 ntTSL 2 BASIC9.36□□□□□ -0.91
HOXD11P31277 LRRC4C-207ENST00000619527 2286 ntAPPRIS P1 TSL 5 BASIC9.36□□□□□ -0.91
HOXD11P31277 SIAE-205ENST00000545756 2921 ntAPPRIS ALT2 TSL 5 BASIC9.36□□□□□ -0.91
HOXD11P31277 TPP2-202ENST00000376065 3931 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
HOXD11P31277 ZCCHC6-205ENST00000375960 4939 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
HOXD11P31277 MIR4458HG-203ENST00000606459 3239 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
HOXD11P31277 ARHGAP5-204ENST00000432921 5003 ntTSL 5 BASIC9.36□□□□□ -0.91
HOXD11P31277 C2-201ENST00000299367 2850 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
HOXD11P31277 MCM10-206ENST00000484800 3157 ntAPPRIS P4 TSL 1 (best) BASIC9.36□□□□□ -0.91
HOXD11P31277 TIMELESS-203ENST00000553532 5121 ntAPPRIS P3 TSL 1 (best) BASIC9.36□□□□□ -0.91
HOXD11P31277 GOSR2-215ENST00000638374 2683 ntTSL 5 BASIC9.36□□□□□ -0.91
HOXD11P31277 PFKFB1-204ENST00000614686 1353 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
HOXD11P31277 LAIR1-203ENST00000391742 4901 ntAPPRIS P4 TSL 1 (best) BASIC9.36□□□□□ -0.91
HOXD11P31277 SMC1B-202ENST00000404354 3636 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
HOXD11P31277 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC9.36□□□□□ -0.91
HOXD11P31277 UBQLNL-201ENST00000380184 2313 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
HOXD11P31277 AC004941.1-201ENST00000417506 3120 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
HOXD11P31277 OR11A1-202ENST00000377148 2482 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
HOXD11P31277 VIPAS39-201ENST00000327028 2614 ntTSL 5 BASIC9.35□□□□□ -0.91
HOXD11P31277 AC009951.1-201ENST00000623674 2614 ntBASIC9.35□□□□□ -0.91
HOXD11P31277 BCAT1-204ENST00000538118 4694 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
HOXD11P31277 SCN5A-206ENST00000425664 8450 ntTSL 5 BASIC9.35□□□□□ -0.91
HOXD11P31277 RNF185-201ENST00000266252 2946 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
HOXD11P31277 VWA3B-213ENST00000477737 4454 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HOXD11P31277 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
HOXD11P31277 LRRC37BP1-203ENST00000417404 4742 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
HOXD11P31277 SEPT4-206ENST00000457347 1795 ntAPPRIS ALT2 TSL 2 BASIC9.35□□□□□ -0.91
HOXD11P31277 HACL1-213ENST00000628377 2214 ntTSL 5 BASIC9.35□□□□□ -0.91
HOXD11P31277 AC012613.2-201ENST00000523176 4533 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
HOXD11P31277 ALDH7A1-227ENST00000636879 2501 ntTSL 5 BASIC9.35□□□□□ -0.91
HOXD11P31277 RASGRP4-220ENST00000622174 2651 ntTSL 5 BASIC9.35□□□□□ -0.91
HOXD11P31277 TIMP2-202ENST00000536189 3415 ntTSL 2 BASIC9.35□□□□□ -0.91
HOXD11P31277 THSD7B-203ENST00000413152 5846 ntTSL 5 BASIC9.35□□□□□ -0.91
HOXD11P31277 RTCB-201ENST00000216038 2027 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HOXD11P31277 RPL22L1-201ENST00000295830 2190 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
HOXD11P31277 RNA5SP234-201ENST00000363916 119 ntBASIC9.35□□□□□ -0.91
HOXD11P31277 FCAR-207ENST00000391725 830 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
HOXD11P31277 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC9.35□□□□□ -0.91
HOXD11P31277 RPS5P3-201ENST00000414617 616 ntBASIC9.35□□□□□ -0.91
HOXD11P31277 AL033527.1-201ENST00000446772 154 ntBASIC9.35□□□□□ -0.91
HOXD11P31277 MNX1-204ENST00000469500 209 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
HOXD11P31277 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC9.35□□□□□ -0.91
HOXD11P31277 PDPN-205ENST00000487038 607 ntTSL 2 BASIC9.35□□□□□ -0.91
HOXD11P31277 SEM1-210ENST00000488005 775 ntTSL 2 BASIC9.35□□□□□ -0.91
HOXD11P31277 IFT122-210ENST00000504021 3541 ntTSL 2 BASIC9.35□□□□□ -0.91
HOXD11P31277 SNORA31.3-201ENST00000516029 96 ntBASIC9.35□□□□□ -0.91
HOXD11P31277 IGHV7-40-201ENST00000520963 296 ntBASIC9.35□□□□□ -0.91
HOXD11P31277 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC9.35□□□□□ -0.91
HOXD11P31277 AC092620.3-201ENST00000562796 2764 ntBASIC9.35□□□□□ -0.91
HOXD11P31277 AC005154.1-225ENST00000581665 564 ntTSL 4 BASIC9.35□□□□□ -0.91
HOXD11P31277 SRGNP1-201ENST00000603392 451 ntBASIC9.35□□□□□ -0.91
HOXD11P31277 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC9.35□□□□□ -0.91
HOXD11P31277 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC9.35□□□□□ -0.91
HOXD11P31277 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC9.35□□□□□ -0.91
HOXD11P31277 TRIM16-202ENST00000416464 3184 ntTSL 2 BASIC9.35□□□□□ -0.91
HOXD11P31277 ABI2-211ENST00000422511 2718 ntTSL 5 BASIC9.35□□□□□ -0.91
HOXD11P31277 BCO2-203ENST00000438022 2598 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
HOXD11P31277 AC079193.2-201ENST00000513892 2292 ntTSL 2 BASIC9.35□□□□□ -0.91
HOXD11P31277 MTSS1-202ENST00000378017 4458 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
HOXD11P31277 UGT2B4-201ENST00000305107 2103 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HOXD11P31277 NPIPB9-202ENST00000550983 2123 ntAPPRIS P2 TSL 1 (best) BASIC9.35□□□□□ -0.91
HOXD11P31277 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
HOXD11P31277 CAPN2-202ENST00000433674 3264 ntTSL 2 BASIC9.35□□□□□ -0.91
HOXD11P31277 PYGB-201ENST00000216962 4134 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HOXD11P31277 SAMD7-201ENST00000335556 2376 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HOXD11P31277 SAMD7-202ENST00000428432 2399 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HOXD11P31277 PHF3-201ENST00000262043 8233 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
HOXD11P31277 JAM2-206ENST00000480456 4337 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
HOXD11P31277 CAPZA2-201ENST00000361183 5182 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
HOXD11P31277 SERPINA5-201ENST00000329597 2337 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
HOXD11P31277 AC007529.1-201ENST00000418574 2178 ntBASIC9.34□□□□□ -0.91
HOXD11P31277 ZNF611-219ENST00000602162 3299 ntTSL 2 BASIC9.34□□□□□ -0.91
HOXD11P31277 PTCH1-206ENST00000421141 7659 ntTSL 5 BASIC9.34□□□□□ -0.91
HOXD11P31277 AC012254.3-201ENST00000591183 2117 ntBASIC9.34□□□□□ -0.91
HOXD11P31277 COL11A1-201ENST00000353414 7173 ntAPPRIS ALT1 TSL 5 BASIC9.34□□□□□ -0.91
HOXD11P31277 C11orf88-203ENST00000529167 3099 ntAPPRIS ALT2 TSL 2 BASIC9.34□□□□□ -0.91
HOXD11P31277 ARHGEF9-232ENST00000637417 5114 ntTSL 5 BASIC9.34□□□□□ -0.91
HOXD11P31277 PPIP5K1-205ENST00000381879 5487 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
HOXD11P31277 MTCL1-207ENST00000518815 3963 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
HOXD11P31277 PLEKHS1-201ENST00000354462 3403 ntTSL 5 BASIC9.34□□□□□ -0.91
HOXD11P31277 RNA5SP161-201ENST00000363871 115 ntBASIC9.34□□□□□ -0.91
HOXD11P31277 RNU6-961P-201ENST00000363893 105 ntBASIC9.34□□□□□ -0.91
HOXD11P31277 U3.34-201ENST00000408198 212 ntBASIC9.34□□□□□ -0.91
HOXD11P31277 ELOCP19-201ENST00000411919 318 ntBASIC9.34□□□□□ -0.91
HOXD11P31277 RPS3AP1-201ENST00000413190 320 ntBASIC9.34□□□□□ -0.91
HOXD11P31277 COX6B1P7-201ENST00000430845 235 ntBASIC9.34□□□□□ -0.91
HOXD11P31277 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC9.34□□□□□ -0.91
HOXD11P31277 AL358976.1-201ENST00000437555 392 ntBASIC9.34□□□□□ -0.91
HOXD11P31277 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
HOXD11P31277 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC9.34□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 143.1 ms