Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC062016.2-201ENST00000420950 676 ntBASIC5.51□□□□□ -1.53
COL5A3P25940 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A3P25940 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC5.51□□□□□ -1.53
COL5A3P25940 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC5.51□□□□□ -1.53
COL5A3P25940 RN7SL812P-201ENST00000493791 279 ntBASIC5.51□□□□□ -1.53
COL5A3P25940 AC104164.2-201ENST00000496953 495 ntBASIC5.51□□□□□ -1.53
COL5A3P25940 AC146944.2-203ENST00000502493 354 ntBASIC5.51□□□□□ -1.53
COL5A3P25940 AC139495.1-202ENST00000513164 354 ntBASIC5.51□□□□□ -1.53
COL5A3P25940 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC5.51□□□□□ -1.53
COL5A3P25940 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC5.51□□□□□ -1.53
COL5A3P25940 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A3P25940 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.51□□□□□ -1.53
COL5A3P25940 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC5.5□□□□□ -1.53
COL5A3P25940 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.5□□□□□ -1.53
COL5A3P25940 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A3P25940 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC5.5□□□□□ -1.53
COL5A3P25940 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A3P25940 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
COL5A3P25940 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
COL5A3P25940 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A3P25940 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
COL5A3P25940 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.5□□□□□ -1.53
COL5A3P25940 DDX39BP2-208ENST00000453923 258 ntBASIC5.5□□□□□ -1.53
COL5A3P25940 RPL23AP2-201ENST00000471227 466 ntBASIC5.5□□□□□ -1.53
COL5A3P25940 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC5.5□□□□□ -1.53
COL5A3P25940 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC5.5□□□□□ -1.53
COL5A3P25940 GTF2IP22-201ENST00000554443 182 ntBASIC5.5□□□□□ -1.53
COL5A3P25940 AGGF1P6-201ENST00000569213 976 ntBASIC5.5□□□□□ -1.53
COL5A3P25940 AC112484.5-201ENST00000624189 228 ntBASIC5.5□□□□□ -1.53
COL5A3P25940 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.5□□□□□ -1.53
COL5A3P25940 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A3P25940 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A3P25940 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC5.5□□□□□ -1.53
COL5A3P25940 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.5□□□□□ -1.53
COL5A3P25940 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.5□□□□□ -1.53
COL5A3P25940 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL5A3P25940 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL5A3P25940 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC5.49□□□□□ -1.53
COL5A3P25940 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
COL5A3P25940 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
COL5A3P25940 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
COL5A3P25940 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL5A3P25940 SNORA71.3-201ENST00000362582 128 ntBASIC5.49□□□□□ -1.53
COL5A3P25940 SNORA5.1-201ENST00000384275 131 ntBASIC5.49□□□□□ -1.53
COL5A3P25940 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL5A3P25940 RNU6ATAC-201ENST00000408749 126 ntBASIC5.49□□□□□ -1.53
COL5A3P25940 RN7SKP167-201ENST00000411047 285 ntBASIC5.49□□□□□ -1.53
COL5A3P25940 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC5.49□□□□□ -1.53
COL5A3P25940 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL5A3P25940 TBCAP1-201ENST00000436520 327 ntBASIC5.49□□□□□ -1.53
COL5A3P25940 AL512326.1-201ENST00000443050 721 ntBASIC5.49□□□□□ -1.53
COL5A3P25940 PTMAP3-201ENST00000447474 330 ntBASIC5.49□□□□□ -1.53
COL5A3P25940 AC108145.1-201ENST00000503770 153 ntBASIC5.49□□□□□ -1.53
COL5A3P25940 IGLVVI-25-1-201ENST00000521893 249 ntBASIC5.49□□□□□ -1.53
COL5A3P25940 OR5BC1P-201ENST00000529327 739 ntBASIC5.49□□□□□ -1.53
COL5A3P25940 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.49□□□□□ -1.53
COL5A3P25940 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC5.49□□□□□ -1.53
COL5A3P25940 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC5.49□□□□□ -1.53
COL5A3P25940 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC5.49□□□□□ -1.53
COL5A3P25940 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
COL5A3P25940 RLIMP1-201ENST00000339626 1680 ntBASIC5.49□□□□□ -1.53
COL5A3P25940 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL5A3P25940 AL603750.1-201ENST00000624216 1717 ntBASIC5.49□□□□□ -1.53
COL5A3P25940 DNM1P47-203ENST00000571780 12667 ntBASIC5.49□□□□□ -1.53
COL5A3P25940 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.49□□□□□ -1.53
COL5A3P25940 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL5A3P25940 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL5A3P25940 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL5A3P25940 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL5A3P25940 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC5.48□□□□□ -1.53
COL5A3P25940 ENSAP1-201ENST00000392855 326 ntBASIC5.48□□□□□ -1.53
COL5A3P25940 RPL7P58-201ENST00000402913 758 ntBASIC5.48□□□□□ -1.53
COL5A3P25940 RN7SKP202-201ENST00000410439 330 ntBASIC5.48□□□□□ -1.53
COL5A3P25940 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.48□□□□□ -1.53
COL5A3P25940 AC004938.1-201ENST00000438468 308 ntBASIC5.48□□□□□ -1.53
COL5A3P25940 ARAFP2-201ENST00000440565 559 ntBASIC5.48□□□□□ -1.53
COL5A3P25940 RPL6P5-201ENST00000445678 828 ntBASIC5.48□□□□□ -1.53
COL5A3P25940 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC5.48□□□□□ -1.53
COL5A3P25940 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC5.48□□□□□ -1.53
COL5A3P25940 DYNLL1P4-201ENST00000549314 266 ntBASIC5.48□□□□□ -1.53
COL5A3P25940 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC5.48□□□□□ -1.53
COL5A3P25940 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC5.48□□□□□ -1.53
COL5A3P25940 AC025175.1-201ENST00000606482 759 ntBASIC5.48□□□□□ -1.53
COL5A3P25940 Z98200.1-201ENST00000607298 470 ntBASIC5.48□□□□□ -1.53
COL5A3P25940 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC5.48□□□□□ -1.53
COL5A3P25940 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.48□□□□□ -1.53
COL5A3P25940 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.48□□□□□ -1.53
COL5A3P25940 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
COL5A3P25940 ARHGAP42P1-201ENST00000507474 1976 ntBASIC5.48□□□□□ -1.53
COL5A3P25940 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL5A3P25940 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL5A3P25940 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL5A3P25940 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
COL5A3P25940 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL5A3P25940 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
COL5A3P25940 HMGB3P5-201ENST00000428894 612 ntBASIC5.48□□□□□ -1.53
COL5A3P25940 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC5.48□□□□□ -1.53
COL5A3P25940 AL133372.1-201ENST00000493565 745 ntBASIC5.48□□□□□ -1.53
COL5A3P25940 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC5.48□□□□□ -1.53
COL5A3P25940 AC007546.2-201ENST00000623996 360 ntBASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms