Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC3.12□□□□□ -1.91
PRKDCP78527 DPY19L3-205ENST00000586987 5925 ntTSL 5 BASIC3.12□□□□□ -1.91
PRKDCP78527 DDX18P6-201ENST00000450119 1997 ntBASIC3.12□□□□□ -1.91
PRKDCP78527 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
PRKDCP78527 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.12□□□□□ -1.91
PRKDCP78527 TLN2-211ENST00000636159 7441 ntTSL 5 BASIC3.12□□□□□ -1.91
PRKDCP78527 SLC23A2-202ENST00000379333 6962 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 AL359265.1-201ENST00000440296 795 ntBASIC3.12□□□□□ -1.91
PRKDCP78527 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC3.12□□□□□ -1.91
PRKDCP78527 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.12□□□□□ -1.91
PRKDCP78527 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.12□□□□□ -1.91
PRKDCP78527 AGGF1P9-201ENST00000561884 913 ntBASIC3.12□□□□□ -1.91
PRKDCP78527 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.12□□□□□ -1.91
PRKDCP78527 AC006065.6-201ENST00000625201 545 ntBASIC3.12□□□□□ -1.91
PRKDCP78527 AL031119.1-201ENST00000404707 1879 ntBASIC3.12□□□□□ -1.91
PRKDCP78527 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
PRKDCP78527 RTL9-201ENST00000465301 5426 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 ZNF37A-202ENST00000361085 8738 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
PRKDCP78527 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC3.12□□□□□ -1.91
PRKDCP78527 PALLD-201ENST00000261509 5809 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 NCKAP1L-201ENST00000293373 9016 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 ERC1-202ENST00000355446 5796 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
PRKDCP78527 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC3.12□□□□□ -1.91
PRKDCP78527 AC016772.1-201ENST00000444170 1261 ntBASIC3.12□□□□□ -1.91
PRKDCP78527 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.12□□□□□ -1.91
PRKDCP78527 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.12□□□□□ -1.91
PRKDCP78527 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC3.12□□□□□ -1.91
PRKDCP78527 AC005972.3-201ENST00000606304 481 ntBASIC3.12□□□□□ -1.91
PRKDCP78527 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 LCMT1-AS2-202ENST00000565214 5666 ntBASIC3.12□□□□□ -1.91
PRKDCP78527 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC3.12□□□□□ -1.91
PRKDCP78527 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC3.12□□□□□ -1.91
PRKDCP78527 CFAP54-202ENST00000524981 9766 ntAPPRIS P2 TSL 5 BASIC3.12□□□□□ -1.91
PRKDCP78527 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC3.12□□□□□ -1.91
PRKDCP78527 SLC7A2-202ENST00000398090 7557 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 ZNF462-204ENST00000441147 4691 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC3.12□□□□□ -1.91
PRKDCP78527 SCN9A-201ENST00000303354 9786 ntAPPRIS ALT1 TSL 5 BASIC3.12□□□□□ -1.91
PRKDCP78527 MR1-204ENST00000367580 7704 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 RNU1-20P-201ENST00000363314 162 ntBASIC3.12□□□□□ -1.91
PRKDCP78527 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC3.12□□□□□ -1.91
PRKDCP78527 MIR30B-201ENST00000384850 88 ntBASIC3.12□□□□□ -1.91
PRKDCP78527 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC3.12□□□□□ -1.91
PRKDCP78527 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC3.12□□□□□ -1.91
PRKDCP78527 AC016559.2-201ENST00000510759 359 ntBASIC3.12□□□□□ -1.91
PRKDCP78527 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC3.12□□□□□ -1.91
PRKDCP78527 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC3.12□□□□□ -1.91
PRKDCP78527 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC3.12□□□□□ -1.91
PRKDCP78527 AC015912.2-201ENST00000571053 181 ntBASIC3.12□□□□□ -1.91
PRKDCP78527 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC3.12□□□□□ -1.91
PRKDCP78527 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.12□□□□□ -1.91
PRKDCP78527 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
PRKDCP78527 MON2-202ENST00000393630 13275 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
PRKDCP78527 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC3.11□□□□□ -1.91
PRKDCP78527 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
PRKDCP78527 DOCK8-204ENST00000432829 7452 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
PRKDCP78527 MAP3K20-201ENST00000338983 7179 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
PRKDCP78527 MED23-203ENST00000368058 4576 ntTSL 5 BASIC3.11□□□□□ -1.91
PRKDCP78527 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
PRKDCP78527 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
PRKDCP78527 AC008549.2-201ENST00000333482 706 ntBASIC3.11□□□□□ -1.91
PRKDCP78527 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
PRKDCP78527 AL451139.1-201ENST00000434718 346 ntBASIC3.11□□□□□ -1.91
PRKDCP78527 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC3.11□□□□□ -1.91
PRKDCP78527 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC3.11□□□□□ -1.91
PRKDCP78527 EIF4BP1-201ENST00000554881 351 ntBASIC3.11□□□□□ -1.91
PRKDCP78527 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC3.11□□□□□ -1.91
PRKDCP78527 AL606490.9-201ENST00000603331 271 ntBASIC3.11□□□□□ -1.91
PRKDCP78527 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC3.11□□□□□ -1.91
PRKDCP78527 CTNND1-234ENST00000532844 6012 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
PRKDCP78527 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
PRKDCP78527 MFSD8-236ENST00000641509 4050 ntBASIC3.11□□□□□ -1.91
PRKDCP78527 OPCML-203ENST00000524381 6424 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
PRKDCP78527 DGKK-201ENST00000611977 7407 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
PRKDCP78527 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
PRKDCP78527 AC009779.8-201ENST00000641684 4384 ntBASIC3.11□□□□□ -1.91
PRKDCP78527 COX6CP13-201ENST00000428703 226 ntBASIC3.11□□□□□ -1.91
PRKDCP78527 AL451050.1-201ENST00000450126 415 ntBASIC3.11□□□□□ -1.91
PRKDCP78527 AC008155.2-201ENST00000464337 397 ntBASIC3.11□□□□□ -1.91
PRKDCP78527 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.11□□□□□ -1.91
PRKDCP78527 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.11□□□□□ -1.91
PRKDCP78527 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.11□□□□□ -1.91
PRKDCP78527 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC3.11□□□□□ -1.91
PRKDCP78527 AC025857.2-201ENST00000602711 238 ntBASIC3.11□□□□□ -1.91
PRKDCP78527 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
PRKDCP78527 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
PRKDCP78527 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC3.11□□□□□ -1.91
PRKDCP78527 CRYBG3-201ENST00000389622 10729 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
PRKDCP78527 FAM186A-204ENST00000543111 8200 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms