Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 DDX10P2-201ENST00000417796 2614 ntBASIC6.3□□□□□ -1.4
COL8A1P27658 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
COL8A1P27658 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 LRRC37B-220ENST00000584368 2773 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 NBPF15-206ENST00000581897 4272 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
COL8A1P27658 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 AL445235.1-201ENST00000431202 1747 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 ZC3H11A-203ENST00000367212 3004 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 ADGRF2-204ENST00000507065 3043 ntTSL 5 BASIC6.3□□□□□ -1.4
COL8A1P27658 IL18RAP-202ENST00000409369 1890 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 DDX42-203ENST00000457800 3323 ntTSL 5 BASIC6.3□□□□□ -1.4
COL8A1P27658 OR1L8-202ENST00000641027 2024 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
COL8A1P27658 OR2T35-202ENST00000641268 2957 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
COL8A1P27658 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 OPRM1-205ENST00000414028 2485 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL8A1P27658 GRIA2-201ENST00000264426 3445 ntAPPRIS ALT1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL8A1P27658 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL8A1P27658 CACNB2-213ENST00000612134 3825 ntTSL 5 BASIC6.29□□□□□ -1.4
COL8A1P27658 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL8A1P27658 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL8A1P27658 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC6.29□□□□□ -1.4
COL8A1P27658 AC126773.4-201ENST00000612545 3043 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 PSG5-202ENST00000366175 1766 ntTSL 5 BASIC6.29□□□□□ -1.4
COL8A1P27658 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC6.29□□□□□ -1.4
COL8A1P27658 AL031594.1-201ENST00000417123 1932 ntTSL 2 BASIC6.29□□□□□ -1.4
COL8A1P27658 ZNF544-206ENST00000596652 2818 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL8A1P27658 ZNF544-217ENST00000600220 2837 ntAPPRIS ALT2 TSL 3 BASIC6.29□□□□□ -1.4
COL8A1P27658 LPAR1-202ENST00000374430 2993 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL8A1P27658 NAT10-201ENST00000257829 4002 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL8A1P27658 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC6.29□□□□□ -1.4
COL8A1P27658 GAPDHP24-201ENST00000328713 983 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
COL8A1P27658 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC6.29□□□□□ -1.4
COL8A1P27658 ZNF540-202ENST00000343599 3073 ntAPPRIS P3 TSL 5 BASIC6.29□□□□□ -1.4
COL8A1P27658 FASLG-202ENST00000367721 1888 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL8A1P27658 MUSK-205ENST00000374448 2754 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
COL8A1P27658 RNU6-831P-201ENST00000384548 107 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 Y_RNA.527-201ENST00000384573 102 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 AC026310.1-201ENST00000396004 378 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 AL136116.1-201ENST00000403591 381 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 COX6A1P3-201ENST00000404167 293 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC6.29□□□□□ -1.4
COL8A1P27658 TMBIM7P-201ENST00000418074 855 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 PSG9-204ENST00000418820 1748 ntTSL 5 BASIC6.29□□□□□ -1.4
COL8A1P27658 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC6.29□□□□□ -1.4
COL8A1P27658 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC6.29□□□□□ -1.4
COL8A1P27658 AC000089.1-201ENST00000424559 801 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC6.29□□□□□ -1.4
COL8A1P27658 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC6.29□□□□□ -1.4
COL8A1P27658 PPIAP17-201ENST00000438507 471 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 RPS26P30-201ENST00000443431 335 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC6.29□□□□□ -1.4
COL8A1P27658 AC007547.1-201ENST00000462177 490 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 AC005550.2-201ENST00000476382 318 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 AC108688.1-201ENST00000485817 713 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 RPS27P20-201ENST00000492051 246 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 AC112484.3-201ENST00000505910 329 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 POU5F1P7-201ENST00000508759 541 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 AC098591.2-201ENST00000510152 315 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 HMGB1P19-201ENST00000517578 577 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 IGKV3D-31-201ENST00000519131 281 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 AC022861.1-201ENST00000522981 663 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 GTF2IP11-201ENST00000526931 420 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 AP001189.2-201ENST00000527320 189 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 AC084121.1-201ENST00000533882 835 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 APOOP3-201ENST00000536787 586 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC6.29□□□□□ -1.4
COL8A1P27658 BNIP3P6-201ENST00000549284 499 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC6.29□□□□□ -1.4
COL8A1P27658 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC6.29□□□□□ -1.4
COL8A1P27658 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC6.29□□□□□ -1.4
COL8A1P27658 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC6.29□□□□□ -1.4
COL8A1P27658 AC006116.1-201ENST00000587908 2171 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 uc_338.15-201ENST00000615470 191 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 MRPL57P3-201ENST00000619218 176 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC6.29□□□□□ -1.4
COL8A1P27658 AL162373.1-201ENST00000620433 407 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC6.29□□□□□ -1.4
COL8A1P27658 MKKS-204ENST00000639674 192 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL8A1P27658 AL117339.4-201ENST00000608335 7063 ntBASIC6.29□□□□□ -1.4
COL8A1P27658 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC6.29□□□□□ -1.4
COL8A1P27658 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL8A1P27658 GDNF-202ENST00000344622 3655 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL8A1P27658 ANO6-201ENST00000320560 5975 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL8A1P27658 SYCP1-202ENST00000369522 3522 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL8A1P27658 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL8A1P27658 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL8A1P27658 ZNF396-201ENST00000306346 2788 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL8A1P27658 RABEP1-201ENST00000341923 2490 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 TLR3-202ENST00000504367 2310 ntTSL 2 BASIC6.28□□□□□ -1.4
COL8A1P27658 FHL1-217ENST00000539015 2310 ntTSL 2 BASIC6.28□□□□□ -1.4
COL8A1P27658 CTD-2201I18.1-202ENST00000514042 2705 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms