Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC7.69□□□□□ -1.18
COL9A1P20849 AC024224.1-201ENST00000538284 609 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 AC090022.1-201ENST00000546569 311 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 OR1E3-201ENST00000575608 948 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 PPIAP14-201ENST00000577627 496 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC7.69□□□□□ -1.18
COL9A1P20849 OR4K8P-201ENST00000578842 1048 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 ZNF675-204ENST00000599168 592 ntTSL 2 BASIC7.69□□□□□ -1.18
COL9A1P20849 AL391813.2-201ENST00000609113 322 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 MILR1-202ENST00000612535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 AL512624.1-201ENST00000613638 469 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 AC015712.7-201ENST00000615211 635 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC7.69□□□□□ -1.18
COL9A1P20849 LIMCH1-218ENST00000513024 5129 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 C1orf158-203ENST00000614859 3549 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 ZKSCAN5-201ENST00000326775 4178 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 ADGRB3-201ENST00000238918 2927 ntTSL 2 BASIC7.69□□□□□ -1.18
COL9A1P20849 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC7.69□□□□□ -1.18
COL9A1P20849 HNRNPA2B1-201ENST00000354667 3664 ntAPPRIS ALT1 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 AGXT2-201ENST00000231420 2364 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 KIT-201ENST00000288135 5186 ntAPPRIS P3 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 SORBS1-208ENST00000371241 2055 ntAPPRIS ALT2 TSL 5 BASIC7.69□□□□□ -1.18
COL9A1P20849 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 ENAH-204ENST00000366844 13168 ntAPPRIS P4 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 ZBTB40-202ENST00000375647 8685 ntAPPRIS P3 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 THG1L-201ENST00000231198 3107 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 MRPS31P5-201ENST00000416599 3494 ntTSL 2 BASIC7.69□□□□□ -1.18
COL9A1P20849 DLC1-201ENST00000276297 7447 ntAPPRIS P4 TSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
COL9A1P20849 AC092279.2-201ENST00000623742 2189 ntBASIC7.69□□□□□ -1.18
COL9A1P20849 MBP-206ENST00000397863 4800 ntTSL 3 BASIC7.68□□□□□ -1.18
COL9A1P20849 BCL2L14-204ENST00000396367 1886 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL9A1P20849 ANGPT2-204ENST00000629816 2602 ntAPPRIS ALT1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL9A1P20849 PARP9-202ENST00000462315 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL9A1P20849 RUNX1T1-203ENST00000396218 3463 ntAPPRIS ALT1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL9A1P20849 MELK-207ENST00000536860 2342 ntTSL 2 BASIC7.68□□□□□ -1.18
COL9A1P20849 CDC27-201ENST00000066544 5801 ntAPPRIS P3 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL9A1P20849 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC7.68□□□□□ -1.18
COL9A1P20849 LSAMP-205ENST00000490035 9446 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL9A1P20849 ATXN1-201ENST00000244769 10602 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL9A1P20849 PARP2-204ENST00000527915 1980 ntTSL 2 BASIC7.68□□□□□ -1.18
COL9A1P20849 AC009318.1-201ENST00000553105 2380 ntTSL 2 BASIC7.68□□□□□ -1.18
COL9A1P20849 GNG12-201ENST00000370982 4404 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL9A1P20849 LINC02208-201ENST00000506769 2803 ntTSL 5 BASIC7.68□□□□□ -1.18
COL9A1P20849 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC7.68□□□□□ -1.18
COL9A1P20849 ZNF569-202ENST00000392149 3689 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL9A1P20849 MAPK10-333ENST00000641607 2481 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 DCAF4L2-201ENST00000319675 3326 ntAPPRIS P1 BASIC7.68□□□□□ -1.18
COL9A1P20849 LINC00547-201ENST00000612438 3314 ntTSL 2 BASIC7.68□□□□□ -1.18
COL9A1P20849 IGKV7-3-201ENST00000357453 298 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 RNU6-853P-201ENST00000364306 107 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 RNU4-7P-201ENST00000364758 141 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL9A1P20849 RNU6-472P-201ENST00000384299 107 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 IGLV5-52-201ENST00000390289 379 ntAPPRIS P1 BASIC7.68□□□□□ -1.18
COL9A1P20849 BCRP8-201ENST00000412037 255 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 PRELID3BP11-201ENST00000414230 479 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 GEMIN2P2-201ENST00000418195 715 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 FTOP1-201ENST00000419363 861 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 PDSS1P1-201ENST00000422953 1114 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC7.68□□□□□ -1.18
COL9A1P20849 AL772337.3-201ENST00000447524 452 ntTSL 3 BASIC7.68□□□□□ -1.18
COL9A1P20849 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC7.68□□□□□ -1.18
COL9A1P20849 RN7SL706P-201ENST00000460079 292 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 AC023194.2-201ENST00000465398 406 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 FTH1P2-201ENST00000466086 412 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 RPS27P20-201ENST00000492051 246 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 TMEM251P1-201ENST00000503717 318 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 AC026784.1-201ENST00000507986 352 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC7.68□□□□□ -1.18
COL9A1P20849 SCARNA6-201ENST00000515982 265 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 RNU6-475P-201ENST00000516073 104 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 Y_RNA.700-201ENST00000516806 100 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 IGKV2D-10-201ENST00000520194 281 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC7.68□□□□□ -1.18
COL9A1P20849 AC103843.2-201ENST00000530523 682 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 EEF1A1P17-201ENST00000547505 1275 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 AC090607.2-201ENST00000560331 695 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 MIR4732-201ENST00000581873 76 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 MIR3128-201ENST00000581957 66 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC7.68□□□□□ -1.18
COL9A1P20849 BBIP1P1-201ENST00000602999 279 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 AP005329.3-201ENST00000609924 686 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 AL021879.1-201ENST00000611756 288 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 AC145207.9-201ENST00000623802 325 ntBASIC7.68□□□□□ -1.18
COL9A1P20849 PTP4A1-206ENST00000627002 447 ntTSL 5 BASIC7.68□□□□□ -1.18
COL9A1P20849 CAST-222ENST00000508579 1758 ntTSL 2 BASIC7.68□□□□□ -1.18
COL9A1P20849 ZBTB43-203ENST00000449886 5851 ntAPPRIS P1 TSL 3 BASIC7.68□□□□□ -1.18
COL9A1P20849 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL9A1P20849 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC7.68□□□□□ -1.18
COL9A1P20849 LDAH-208ENST00000435420 3837 ntTSL 2 BASIC7.68□□□□□ -1.18
COL9A1P20849 INTS7-203ENST00000366994 4417 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL9A1P20849 LNX1-201ENST00000263925 2953 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL9A1P20849 PPFIBP2-216ENST00000530181 2965 ntAPPRIS ALT2 TSL 2 BASIC7.68□□□□□ -1.18
COL9A1P20849 KCNH7-202ENST00000332142 4113 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
COL9A1P20849 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC7.67□□□□□ -1.18
COL9A1P20849 USP32P2-201ENST00000412260 4329 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
COL9A1P20849 ELMO2-202ENST00000352077 2157 ntAPPRIS ALT1 TSL 5 BASIC7.67□□□□□ -1.18
COL9A1P20849 CFI-201ENST00000394634 2159 ntAPPRIS P3 TSL 1 (best) BASIC7.67□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms