Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RPS16P5-201ENST00000406501 404 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 LSM5-206ENST00000409987 504 ntTSL 5 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 RN7SKP29-201ENST00000410957 272 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AL445183.3-201ENST00000414168 502 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 XKRYP4-201ENST00000414395 483 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 VN1R42P-201ENST00000424651 344 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AL662874.1-201ENST00000426065 230 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AL512637.2-201ENST00000431287 1256 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AL645931.1-201ENST00000439737 410 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 XKRYP5-201ENST00000449659 483 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 HMGB1P5-202ENST00000451497 985 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 RPL32P14-201ENST00000463196 378 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 ATP5G1P3-201ENST00000463301 410 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 RN7SL385P-201ENST00000468873 276 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 NDUFA5P9-201ENST00000472609 340 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AP000797.2-201ENST00000475768 606 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 RPL21P6-201ENST00000479171 504 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 UBA52P3-201ENST00000491303 382 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 NENFP3-201ENST00000503735 313 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 RPEP1-201ENST00000504507 658 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 SLC25A15P5-201ENST00000508033 253 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AC021106.1-201ENST00000509020 1058 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 RN7SKP157-201ENST00000516174 282 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 RNA5SP230-201ENST00000517039 122 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AC139365.2-201ENST00000517972 253 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AC104115.2-201ENST00000523026 687 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AC079064.1-201ENST00000528365 362 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 C1GALT1P1-201ENST00000548895 1089 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 IGBP1P1-201ENST00000554337 1009 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AL356801.1-201ENST00000559320 294 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AC079075.1-201ENST00000559543 878 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 HCG18-243ENST00000602498 327 ntTSL 3 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AC079880.2-201ENST00000603790 1213 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AC018645.2-201ENST00000609151 472 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AC116447.1-201ENST00000613153 453 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AC005840.5-201ENST00000619166 599 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 ZNF90P1-201ENST00000480493 1951 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 MAPK10-328ENST00000641553 4009 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 AL359715.3-201ENST00000569267 2123 ntBASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PDLIM3Q53GG5 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AC007996.1-201ENST00000620414 2821 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 RNA5SP326-201ENST00000363209 110 ntBASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PDLIM3Q53GG5 SNORA48.4-201ENST00000391089 134 ntBASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms