Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC3.62□□□□□ -1.83
HLA-DQA1P01909 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC3.62□□□□□ -1.83
HLA-DQA1P01909 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC3.62□□□□□ -1.83
HLA-DQA1P01909 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC3.62□□□□□ -1.83
HLA-DQA1P01909 AC009268.1-201ENST00000561352 1203 ntBASIC3.62□□□□□ -1.83
HLA-DQA1P01909 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC3.62□□□□□ -1.83
HLA-DQA1P01909 MIR1273E-201ENST00000581165 102 ntBASIC3.62□□□□□ -1.83
HLA-DQA1P01909 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC3.62□□□□□ -1.83
HLA-DQA1P01909 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC3.62□□□□□ -1.83
HLA-DQA1P01909 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC3.62□□□□□ -1.83
HLA-DQA1P01909 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC3.62□□□□□ -1.83
HLA-DQA1P01909 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC3.62□□□□□ -1.83
HLA-DQA1P01909 AL049794.2-201ENST00000616301 365 ntBASIC3.62□□□□□ -1.83
HLA-DQA1P01909 AC074276.2-201ENST00000619891 348 ntBASIC3.62□□□□□ -1.83
HLA-DQA1P01909 AC074101.1-201ENST00000637861 241 ntBASIC3.62□□□□□ -1.83
HLA-DQA1P01909 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
HLA-DQA1P01909 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HLA-DQA1P01909 AC093775.1-201ENST00000624154 1868 ntBASIC3.62□□□□□ -1.83
HLA-DQA1P01909 AC087565.3-202ENST00000642085 1603 ntBASIC3.62□□□□□ -1.83
HLA-DQA1P01909 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
HLA-DQA1P01909 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
HLA-DQA1P01909 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
HLA-DQA1P01909 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC3.62□□□□□ -1.83
HLA-DQA1P01909 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 AC107021.2-201ENST00000567714 2095 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 OR56B2P-201ENST00000317102 954 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 U3.3-201ENST00000362986 216 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 RNA5SP242-201ENST00000364171 118 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 RN7SKP124-201ENST00000364730 341 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 RNU6-729P-201ENST00000384399 107 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 MT-RNR1-201ENST00000389680 954 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 RNU1-77P-201ENST00000390868 162 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 RPL5P19-201ENST00000404228 893 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 NPM1P26-201ENST00000426339 738 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 SKP1P3-201ENST00000429280 487 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 AL392003.1-201ENST00000434394 243 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 MAPRE1P3-201ENST00000435438 796 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 LARP7P4-201ENST00000481075 878 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 AC093270.2-201ENST00000486157 792 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 RPS6P4-201ENST00000494693 758 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 RN7SL466P-201ENST00000497546 295 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 RNA5SP362-201ENST00000516048 118 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 HMGB1P40-201ENST00000525121 540 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 RBM22P1-201ENST00000578589 1214 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 RPL27-207ENST00000590864 569 ntTSL 2 BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 AC131238.1-201ENST00000617135 328 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 RMST_5.1-201ENST00000618704 126 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 AC005840.5-201ENST00000619166 599 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 AC067931.1-201ENST00000624190 671 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 AL356121.2-201ENST00000624715 780 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 SAMMSON-209ENST00000641222 1100 ntBASIC3.61□□□□□ -1.83
HLA-DQA1P01909 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC3.61□□□□□ -1.83
HLA-DQA1P01909 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 MIR133B-201ENST00000362210 119 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 RNA5SP435-201ENST00000364044 108 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 SNORD74.4-201ENST00000364129 80 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 RN7SKP15-201ENST00000364742 309 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 ATP5F1P2-201ENST00000398143 760 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 SNORA11.3-201ENST00000408471 128 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 SNORA77-201ENST00000408716 125 ntBASIC3.6□□□□□ -1.83
HLA-DQA1P01909 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-DQA1P01909 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms