Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC5.25□□□□□ -1.57
CLDN3O15551 AC117490.2-201ENST00000610042 594 ntBASIC5.25□□□□□ -1.57
CLDN3O15551 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.25□□□□□ -1.57
CLDN3O15551 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.25□□□□□ -1.57
CLDN3O15551 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
CLDN3O15551 AP000542.2-201ENST00000623199 6179 ntBASIC5.25□□□□□ -1.57
CLDN3O15551 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CLDN3O15551 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5.25□□□□□ -1.57
CLDN3O15551 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.25□□□□□ -1.57
CLDN3O15551 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CLDN3O15551 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
CLDN3O15551 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CLDN3O15551 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.24□□□□□ -1.57
CLDN3O15551 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CLDN3O15551 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.24□□□□□ -1.57
CLDN3O15551 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CLDN3O15551 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CLDN3O15551 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC5.24□□□□□ -1.57
CLDN3O15551 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC5.24□□□□□ -1.57
CLDN3O15551 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CLDN3O15551 MT-RNR1-201ENST00000389680 954 ntBASIC5.24□□□□□ -1.57
CLDN3O15551 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
CLDN3O15551 NPM1P40-201ENST00000412758 733 ntBASIC5.24□□□□□ -1.57
CLDN3O15551 AL355994.1-201ENST00000424379 260 ntBASIC5.24□□□□□ -1.57
CLDN3O15551 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC5.24□□□□□ -1.57
CLDN3O15551 AC022336.1-201ENST00000475510 337 ntBASIC5.24□□□□□ -1.57
CLDN3O15551 SCARNA22-201ENST00000503991 125 ntBASIC5.24□□□□□ -1.57
CLDN3O15551 AL671862.1-201ENST00000515851 349 ntBASIC5.24□□□□□ -1.57
CLDN3O15551 RNU1-6P-201ENST00000516290 144 ntBASIC5.24□□□□□ -1.57
CLDN3O15551 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC5.24□□□□□ -1.57
CLDN3O15551 SOX5P1-201ENST00000524155 1127 ntBASIC5.24□□□□□ -1.57
CLDN3O15551 BNIP3P1-201ENST00000547295 580 ntBASIC5.24□□□□□ -1.57
CLDN3O15551 AL049874.4-201ENST00000557593 255 ntBASIC5.24□□□□□ -1.57
CLDN3O15551 MIR4270-201ENST00000581799 70 ntBASIC5.24□□□□□ -1.57
CLDN3O15551 FAM106CP-201ENST00000582212 507 ntBASIC5.24□□□□□ -1.57
CLDN3O15551 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC5.24□□□□□ -1.57
CLDN3O15551 AC015922.4-201ENST00000612568 690 ntBASIC5.24□□□□□ -1.57
CLDN3O15551 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.24□□□□□ -1.57
CLDN3O15551 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.24□□□□□ -1.57
CLDN3O15551 AC006453.5-201ENST00000636451 619 ntBASIC5.24□□□□□ -1.57
CLDN3O15551 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CLDN3O15551 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.24□□□□□ -1.57
CLDN3O15551 STX3-208ENST00000641815 3236 ntBASIC5.24□□□□□ -1.57
CLDN3O15551 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CLDN3O15551 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5.24□□□□□ -1.57
CLDN3O15551 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
CLDN3O15551 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CLDN3O15551 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CLDN3O15551 DDX18P5-201ENST00000534547 1306 ntBASIC5.23□□□□□ -1.57
CLDN3O15551 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.23□□□□□ -1.57
CLDN3O15551 AL356317.1-201ENST00000396110 1436 ntBASIC5.23□□□□□ -1.57
CLDN3O15551 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CLDN3O15551 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CLDN3O15551 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
CLDN3O15551 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.23□□□□□ -1.57
CLDN3O15551 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CLDN3O15551 MIR585-201ENST00000384887 94 ntBASIC5.23□□□□□ -1.57
CLDN3O15551 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
CLDN3O15551 AC104297.1-201ENST00000393779 870 ntBASIC5.23□□□□□ -1.57
CLDN3O15551 RSU1P3-201ENST00000412878 835 ntBASIC5.23□□□□□ -1.57
CLDN3O15551 BX510359.2-201ENST00000417920 305 ntBASIC5.23□□□□□ -1.57
CLDN3O15551 AL121878.1-201ENST00000418638 859 ntBASIC5.23□□□□□ -1.57
CLDN3O15551 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC5.23□□□□□ -1.57
CLDN3O15551 AC005154.2-201ENST00000438110 379 ntBASIC5.23□□□□□ -1.57
CLDN3O15551 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC5.23□□□□□ -1.57
CLDN3O15551 RPS23P1-201ENST00000491662 432 ntBASIC5.23□□□□□ -1.57
CLDN3O15551 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CLDN3O15551 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC5.23□□□□□ -1.57
CLDN3O15551 RNA5SP303-201ENST00000516192 130 ntBASIC5.23□□□□□ -1.57
CLDN3O15551 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC5.23□□□□□ -1.57
CLDN3O15551 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC5.23□□□□□ -1.57
CLDN3O15551 AC084759.1-201ENST00000561168 290 ntBASIC5.23□□□□□ -1.57
CLDN3O15551 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC5.23□□□□□ -1.57
CLDN3O15551 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC5.23□□□□□ -1.57
CLDN3O15551 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.23□□□□□ -1.57
CLDN3O15551 AC015722.2-201ENST00000622210 551 ntBASIC5.23□□□□□ -1.57
CLDN3O15551 LDHA-225ENST00000625635 141 ntTSL 5 BASIC5.23□□□□□ -1.57
CLDN3O15551 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
CLDN3O15551 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
CLDN3O15551 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.23□□□□□ -1.57
CLDN3O15551 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.23□□□□□ -1.57
CLDN3O15551 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.23□□□□□ -1.57
CLDN3O15551 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CLDN3O15551 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.23□□□□□ -1.57
CLDN3O15551 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.22□□□□□ -1.57
CLDN3O15551 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
CLDN3O15551 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
CLDN3O15551 AC133552.1-201ENST00000569988 4007 ntBASIC5.22□□□□□ -1.57
CLDN3O15551 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.22□□□□□ -1.57
CLDN3O15551 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
CLDN3O15551 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.22□□□□□ -1.57
CLDN3O15551 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CLDN3O15551 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.22□□□□□ -1.57
CLDN3O15551 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.22□□□□□ -1.57
CLDN3O15551 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CLDN3O15551 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.22□□□□□ -1.57
CLDN3O15551 MIR365B-201ENST00000362317 111 ntBASIC5.22□□□□□ -1.57
CLDN3O15551 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CLDN3O15551 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
CLDN3O15551 CASKP1-201ENST00000412870 582 ntBASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms