Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC015524.1-201ENST00000491585 472 ntBASIC7.76□□□□□ -1.17
COL9A1P20849 HNRNPA1P44-201ENST00000503999 879 ntBASIC7.76□□□□□ -1.17
COL9A1P20849 CHCHD2P7-201ENST00000508008 452 ntBASIC7.76□□□□□ -1.17
COL9A1P20849 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC7.76□□□□□ -1.17
COL9A1P20849 RN7SKP219-201ENST00000516825 296 ntBASIC7.76□□□□□ -1.17
COL9A1P20849 RNU6-182P-201ENST00000516970 105 ntBASIC7.76□□□□□ -1.17
COL9A1P20849 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC7.76□□□□□ -1.17
COL9A1P20849 IGLVIV-59-201ENST00000520218 250 ntBASIC7.76□□□□□ -1.17
COL9A1P20849 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC7.76□□□□□ -1.17
COL9A1P20849 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC7.76□□□□□ -1.17
COL9A1P20849 AC073571.1-201ENST00000549103 475 ntTSL 3 BASIC7.76□□□□□ -1.17
COL9A1P20849 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC7.76□□□□□ -1.17
COL9A1P20849 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC7.76□□□□□ -1.17
COL9A1P20849 AC011447.2-201ENST00000592921 283 ntBASIC7.76□□□□□ -1.17
COL9A1P20849 RPS27AP19-201ENST00000597285 458 ntBASIC7.76□□□□□ -1.17
COL9A1P20849 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC7.76□□□□□ -1.17
COL9A1P20849 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
COL9A1P20849 5S_rRNA.29-201ENST00000641250 107 ntBASIC7.76□□□□□ -1.17
COL9A1P20849 ATP5A1P10-201ENST00000622403 1603 ntBASIC7.76□□□□□ -1.17
COL9A1P20849 CCDC77-203ENST00000422000 2338 ntAPPRIS ALT2 TSL 5 BASIC7.76□□□□□ -1.17
COL9A1P20849 SNX16-202ENST00000353788 3032 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
COL9A1P20849 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC7.76□□□□□ -1.17
COL9A1P20849 CDH18-201ENST00000274170 2809 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL9A1P20849 GPR182-201ENST00000300098 3451 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL9A1P20849 AC004947.1-201ENST00000420912 2781 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
COL9A1P20849 HIVEP3-202ENST00000372584 12319 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL9A1P20849 RRM2-201ENST00000304567 3271 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL9A1P20849 ZNF345-206ENST00000529555 3527 ntAPPRIS P1 TSL 2 BASIC7.75□□□□□ -1.17
COL9A1P20849 BDNF-204ENST00000395980 4030 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL9A1P20849 ZNF546-207ENST00000600094 3426 ntAPPRIS ALT2 TSL 2 BASIC7.75□□□□□ -1.17
COL9A1P20849 AC008498.2-201ENST00000624033 2322 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 C6orf89-202ENST00000359359 2565 ntTSL 5 BASIC7.75□□□□□ -1.17
COL9A1P20849 TPP2-202ENST00000376065 3931 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL9A1P20849 ENOX1-AS1-201ENST00000444442 3907 ntTSL 5 BASIC7.75□□□□□ -1.17
COL9A1P20849 TRIM53BP-201ENST00000532912 1720 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 BCL6-201ENST00000232014 2710 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL9A1P20849 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC7.75□□□□□ -1.17
COL9A1P20849 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL9A1P20849 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC7.75□□□□□ -1.17
COL9A1P20849 TSC22D1-212ENST00000611198 2877 ntTSL 2 BASIC7.75□□□□□ -1.17
COL9A1P20849 TSC22D1-213ENST00000622051 2872 ntTSL 2 BASIC7.75□□□□□ -1.17
COL9A1P20849 NAMPTP1-201ENST00000440465 2514 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 RTN4-206ENST00000394611 4161 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
COL9A1P20849 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL9A1P20849 RPL23AP57-201ENST00000332361 466 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 MRAP-202ENST00000339944 440 ntAPPRIS ALT2 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL9A1P20849 SNORA64.3-201ENST00000365647 134 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 Y_RNA.493-201ENST00000384422 102 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 COX6A1P3-201ENST00000404167 293 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC7.75□□□□□ -1.17
COL9A1P20849 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC7.75□□□□□ -1.17
COL9A1P20849 PGBD4P6-201ENST00000421501 610 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 TEX41-206ENST00000432608 661 ntTSL 3 BASIC7.75□□□□□ -1.17
COL9A1P20849 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC7.75□□□□□ -1.17
COL9A1P20849 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC7.75□□□□□ -1.17
COL9A1P20849 RPL31P50-201ENST00000471002 296 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 AC128716.1-201ENST00000475129 166 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 NDUFS5P2-201ENST00000484004 306 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 AP001025.2-201ENST00000490908 477 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 ALDH7A1P3-201ENST00000492517 345 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 TRBVA-201ENST00000498804 316 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 AC079768.1-201ENST00000503181 711 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 AK3P4-201ENST00000504283 583 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 AC108120.1-201ENST00000506543 991 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 AC012560.1-203ENST00000510550 595 ntTSL 4 BASIC7.75□□□□□ -1.17
COL9A1P20849 OR7E87P-201ENST00000532397 929 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC7.75□□□□□ -1.17
COL9A1P20849 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC7.75□□□□□ -1.17
COL9A1P20849 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC7.75□□□□□ -1.17
COL9A1P20849 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC7.75□□□□□ -1.17
COL9A1P20849 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC7.75□□□□□ -1.17
COL9A1P20849 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC7.75□□□□□ -1.17
COL9A1P20849 AC063962.1-201ENST00000608199 521 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 AC011890.2-201ENST00000613393 294 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 RN7SL126P-201ENST00000616400 299 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC7.75□□□□□ -1.17
COL9A1P20849 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC7.75□□□□□ -1.17
COL9A1P20849 CYFIP1-208ENST00000617928 6793 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL9A1P20849 AKAP3-206ENST00000545990 3318 ntAPPRIS P1 TSL 2 BASIC7.75□□□□□ -1.17
COL9A1P20849 UBAP2L-220ENST00000613315 3451 ntTSL 2 BASIC7.75□□□□□ -1.17
COL9A1P20849 EPN2-204ENST00000395620 3860 ntAPPRIS ALT1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL9A1P20849 SDK2-201ENST00000392650 10723 ntAPPRIS P1 TSL 5 BASIC7.75□□□□□ -1.17
COL9A1P20849 NFIB-205ENST00000380959 8198 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
COL9A1P20849 FHL1-201ENST00000345434 2458 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
COL9A1P20849 LPAR1-205ENST00000541779 2490 ntAPPRIS ALT1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL9A1P20849 GIMAP8-201ENST00000307271 4184 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL9A1P20849 CASC23-201ENST00000534076 1563 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
COL9A1P20849 NCAPH-201ENST00000240423 2763 ntAPPRIS P2 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL9A1P20849 OLFML1-201ENST00000329293 2792 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL9A1P20849 LINC01653-201ENST00000456026 1728 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
COL9A1P20849 TRIM60-204ENST00000512596 1888 ntAPPRIS P1 TSL 2 BASIC7.75□□□□□ -1.17
COL9A1P20849 ZNF611-203ENST00000540744 4417 ntAPPRIS P1 TSL 4 BASIC7.75□□□□□ -1.17
COL9A1P20849 ZFHX3-203ENST00000397992 13841 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 PUM1-204ENST00000373747 5375 ntAPPRIS ALT1 TSL 5 BASIC7.74□□□□□ -1.17
COL9A1P20849 AC007996.1-201ENST00000620414 2821 ntBASIC7.74□□□□□ -1.17
COL9A1P20849 LINC01427-202ENST00000635258 4566 ntTSL 5 BASIC7.74□□□□□ -1.17
COL9A1P20849 SLC16A4-206ENST00000472422 2420 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 NAA11-201ENST00000286794 2014 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL9A1P20849 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC7.74□□□□□ -1.17
COL9A1P20849 UBN1-208ENST00000590769 3530 ntTSL 2 BASIC7.74□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms