Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PAICSP4-201ENST00000517543 1253 ntBASIC4.44□□□□□ -1.7
VPS13AQ96RL7 FCF1-203ENST00000553615 954 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 RAPGEF5-202ENST00000401957 6159 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 ERG-202ENST00000398897 4651 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 AC073342.2-201ENST00000595842 1800 ntBASIC4.44□□□□□ -1.7
VPS13AQ96RL7 AL079307.1-201ENST00000553312 5982 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 NBPF12-202ENST00000579935 5035 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 ZNF667-206ENST00000591790 5250 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 AC104763.1-201ENST00000475274 360 ntBASIC4.43□□□□□ -1.7
VPS13AQ96RL7 ACTR3BP4-201ENST00000503033 1244 ntBASIC4.43□□□□□ -1.7
VPS13AQ96RL7 ENPP7P11-201ENST00000505915 627 ntBASIC4.43□□□□□ -1.7
VPS13AQ96RL7 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 SRGNP1-201ENST00000603392 451 ntBASIC4.43□□□□□ -1.7
VPS13AQ96RL7 AC015967.1-201ENST00000619893 476 ntBASIC4.43□□□□□ -1.7
VPS13AQ96RL7 AC006453.5-201ENST00000636451 619 ntBASIC4.43□□□□□ -1.7
VPS13AQ96RL7 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 MYPN-205ENST00000613327 6116 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.43□□□□□ -1.7
VPS13AQ96RL7 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 RPL21P65-201ENST00000406094 466 ntBASIC4.43□□□□□ -1.7
VPS13AQ96RL7 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 RPS29P7-201ENST00000439662 171 ntBASIC4.43□□□□□ -1.7
VPS13AQ96RL7 RPL7P33-201ENST00000444159 742 ntBASIC4.43□□□□□ -1.7
VPS13AQ96RL7 AC099669.2-201ENST00000616549 437 ntBASIC4.43□□□□□ -1.7
VPS13AQ96RL7 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 MAPK10-328ENST00000641553 4009 ntBASIC4.43□□□□□ -1.7
VPS13AQ96RL7 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 CTNND1-227ENST00000530748 5925 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 XIAP-202ENST00000371199 8591 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 RYBP-201ENST00000477973 7215 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 RASGEF1B-203ENST00000436139 6323 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 AL162151.2-201ENST00000448875 158 ntBASIC4.43□□□□□ -1.7
VPS13AQ96RL7 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS13AQ96RL7 AC096553.1-201ENST00000605169 829 ntBASIC4.43□□□□□ -1.7
VPS13AQ96RL7 AC090912.3-201ENST00000609775 533 ntBASIC4.43□□□□□ -1.7
VPS13AQ96RL7 AC012314.7-201ENST00000619693 93 ntBASIC4.43□□□□□ -1.7
VPS13AQ96RL7 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 AC011447.7-201ENST00000624228 1590 ntBASIC4.42□□□□□ -1.7
VPS13AQ96RL7 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 AP001157.1-201ENST00000550837 2339 ntBASIC4.42□□□□□ -1.7
VPS13AQ96RL7 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 SOX6-202ENST00000396356 8865 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 AC093297.3-201ENST00000607056 2517 ntBASIC4.42□□□□□ -1.7
VPS13AQ96RL7 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 AP000907.1-201ENST00000428428 510 ntBASIC4.42□□□□□ -1.7
VPS13AQ96RL7 AC236972.1-201ENST00000433225 199 ntBASIC4.42□□□□□ -1.7
VPS13AQ96RL7 AC022133.1-201ENST00000490961 571 ntBASIC4.42□□□□□ -1.7
VPS13AQ96RL7 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 MYH15-201ENST00000273353 7074 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 TNFRSF9-204ENST00000615230 5970 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 MGAM-209ENST00000620571 6483 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 CACNA1D-211ENST00000636570 6441 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms