RNA–Protein interactions for RNA: ENST00000615230.4

TNFRSF9-204, Transcript of TNF receptor superfamily member 9, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TNFRSF9, Length 5,970 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF9-204ENST00000615230 NISCHQ9Y2I1 1504 aa17.54■□□□□ 0.4
TNFRSF9-204ENST00000615230 DCAF8L2P0C7V8 631 aa17.32■□□□□ 0.36
TNFRSF9-204ENST00000615230 FAM9AQ8IZU1 332 aaPredicted RBP16.06■□□□□ 0.16
TNFRSF9-204ENST00000615230 SUPT5HO00267 1087 aaKnown RBP15.89■□□□□ 0.13
TNFRSF9-204ENST00000615230 SHROOM4Q9ULL8 1493 aa15.83■□□□□ 0.12
TNFRSF9-204ENST00000615230 APLP2Q06481 763 aa15.55■□□□□ 0.08
TNFRSF9-204ENST00000615230 ABCC9O60706 1549 aa15.23■□□□□ 0.03
TNFRSF9-204ENST00000615230 TRIM41Q8WV44 630 aa15.07■□□□□ 0
TNFRSF9-204ENST00000615230 CCDC180Q9P1Z9 1646 aa15.05■□□□□ 0
TNFRSF9-204ENST00000615230 EHMT2Q96KQ7 1210 aa14.99□□□□□ -0.01
TNFRSF9-204ENST00000615230 ATP1B4Q9UN42 357 aaPredicted RBP14.9□□□□□ -0.02
TNFRSF9-204ENST00000615230 UBTFP17480 764 aaKnown RBP14.87□□□□□ -0.03
TNFRSF9-204ENST00000615230 PABPN1Q86U42 306 aaKnown RBP eCLIP14.79□□□□□ -0.04
TNFRSF9-204ENST00000615230 RB1CC1Q8TDY2 1594 aa14.75□□□□□ -0.05
TNFRSF9-204ENST00000615230 RANGAP1P46060 587 aaPredicted RBP14.73□□□□□ -0.05
TNFRSF9-204ENST00000615230 PELP1Q8IZL8 1130 aaKnown RBP14.72□□□□□ -0.05
TNFRSF9-204ENST00000615230 MYT1LQ9UL68 1186 aa14.67□□□□□ -0.06
TNFRSF9-204ENST00000615230 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.64□□□□□ -0.07
TNFRSF9-204ENST00000615230 HNRNPUL2Q1KMD3 747 aaKnown RBP14.64□□□□□ -0.07
TNFRSF9-204ENST00000615230 NACADO15069 1562 aa14.57□□□□□ -0.08
TNFRSF9-204ENST00000615230 ZEB1P37275 1124 aaPredicted RBP14.54□□□□□ -0.08
TNFRSF9-204ENST00000615230 SCRIBQ14160 1630 aa14.52□□□□□ -0.08
TNFRSF9-204ENST00000615230 ZCCHC6Q5VYS8 1495 aaKnown RBP14.51□□□□□ -0.09
TNFRSF9-204ENST00000615230 TTBK1Q5TCY1 1321 aaPredicted RBP14.45□□□□□ -0.1
TNFRSF9-204ENST00000615230 CCER1Q8TC90 406 aaPredicted RBP14.32□□□□□ -0.12
TNFRSF9-204ENST00000615230 FBLN2P98095 1184 aa14.32□□□□□ -0.12
TNFRSF9-204ENST00000615230 PCGF6Q9BYE7 350 aa14.27□□□□□ -0.13
TNFRSF9-204ENST00000615230 NPM1P06748 294 aaKnown RBP eCLIP14.24□□□□□ -0.13
TNFRSF9-204ENST00000615230 CDK11AQ9UQ88 783 aaPredicted RBP14.21□□□□□ -0.13
TNFRSF9-204ENST00000615230 DCAF1Q9Y4B6 1507 aa14.19□□□□□ -0.14
TNFRSF9-204ENST00000615230 ESF1Q9H501 851 aaKnown RBP14.09□□□□□ -0.15
TNFRSF9-204ENST00000615230 CHIC1Q5VXU3 224 aa14.09□□□□□ -0.15
TNFRSF9-204ENST00000615230 BAZ1BQ9UIG0 1483 aaKnown RBP14.08□□□□□ -0.16
TNFRSF9-204ENST00000615230 ERCC6Q03468 1493 aa14.07□□□□□ -0.16
TNFRSF9-204ENST00000615230 TRIM26Q12899 539 aaPredicted RBP14.07□□□□□ -0.16
TNFRSF9-204ENST00000615230 ITGAEP38570 1179 aa14.05□□□□□ -0.16
TNFRSF9-204ENST00000615230 CENPBP07199 599 aaPredicted RBP14.05□□□□□ -0.16
TNFRSF9-204ENST00000615230 FAM50AQ14320 339 aaKnown RBP14.02□□□□□ -0.16
TNFRSF9-204ENST00000615230 CHMP7Q8WUX9 453 aaPredicted RBP13.98□□□□□ -0.17
TNFRSF9-204ENST00000615230 BAZ1AQ9NRL2 1556 aaPredicted RBP13.98□□□□□ -0.17
TNFRSF9-204ENST00000615230 TRIM52Q96A61 297 aa13.97□□□□□ -0.17
TNFRSF9-204ENST00000615230 MYO15BQ96JP2 1530 aa13.97□□□□□ -0.17
TNFRSF9-204ENST00000615230 NEFLP07196 543 aa13.97□□□□□ -0.17
TNFRSF9-204ENST00000615230 CSRNP3Q8WYN3 585 aa13.96□□□□□ -0.18
TNFRSF9-204ENST00000615230 SLC4A1APQ9BWU0 796 aaKnown RBP13.91□□□□□ -0.18
TNFRSF9-204ENST00000615230 SMARCA2P51531 1590 aa13.91□□□□□ -0.18
TNFRSF9-204ENST00000615230 ACIN1Q9UKV3 1341 aaKnown RBP13.88□□□□□ -0.19
TNFRSF9-204ENST00000615230 BCANQ96GW7 911 aa13.87□□□□□ -0.19
TNFRSF9-204ENST00000615230 POLR3GLQ9BT43 218 aa13.86□□□□□ -0.19
TNFRSF9-204ENST00000615230 EEA1Q15075 1411 aa13.84□□□□□ -0.19
TNFRSF9-204ENST00000615230 PDS5BQ9NTI5 1447 aa13.81□□□□□ -0.2
TNFRSF9-204ENST00000615230 PPARGC1BQ86YN6 1023 aaKnown RBP13.81□□□□□ -0.2
TNFRSF9-204ENST00000615230 STAG3Q9UJ98 1225 aa13.79□□□□□ -0.2
TNFRSF9-204ENST00000615230 ERICH6Q7L0X2 663 aa13.77□□□□□ -0.2
TNFRSF9-204ENST00000615230 ZNF777Q9ULD5 760 aaPredicted RBP13.77□□□□□ -0.21
TNFRSF9-204ENST00000615230 P3H3Q8IVL6 736 aa13.75□□□□□ -0.21
TNFRSF9-204ENST00000615230 LOC105371045A0A1W2PR82 267 aa13.74□□□□□ -0.21
TNFRSF9-204ENST00000615230 RSF1Q96T23 1441 aaPredicted RBP13.74□□□□□ -0.21
TNFRSF9-204ENST00000615230 KIF27Q86VH2 1401 aa13.73□□□□□ -0.21
TNFRSF9-204ENST00000615230 NEFMP07197 916 aa13.73□□□□□ -0.21
TNFRSF9-204ENST00000615230 WRNQ14191 1432 aaPredicted RBP eCLIP13.68□□□□□ -0.22
TNFRSF9-204ENST00000615230 TSPY4P0CV99 314 aa13.66□□□□□ -0.22
TNFRSF9-204ENST00000615230 TSPY10P0CW01 314 aa13.66□□□□□ -0.22
TNFRSF9-204ENST00000615230 PLEKHD1A6NEE1 506 aa13.65□□□□□ -0.22
TNFRSF9-204ENST00000615230 ARID3CA6NKF2 412 aa13.64□□□□□ -0.23
TNFRSF9-204ENST00000615230 CECR2Q9BXF3 1484 aa13.63□□□□□ -0.23
TNFRSF9-204ENST00000615230 MTUS2Q5JR59 1369 aa13.62□□□□□ -0.23
TNFRSF9-204ENST00000615230 GOLGA3Q08378 1498 aa13.61□□□□□ -0.23
TNFRSF9-204ENST00000615230 CEP164Q9UPV0 1460 aa13.6□□□□□ -0.23
TNFRSF9-204ENST00000615230 ABCC8Q09428 1581 aa13.57□□□□□ -0.24
TNFRSF9-204ENST00000615230 ZNF326Q5BKZ1 582 aaKnown RBP13.57□□□□□ -0.24
TNFRSF9-204ENST00000615230 CARMIL2Q6F5E8 1435 aa13.56□□□□□ -0.24
TNFRSF9-204ENST00000615230 NEUROD1Q13562 356 aa13.55□□□□□ -0.24
TNFRSF9-204ENST00000615230 DAXXQ9UER7 740 aaPredicted RBP13.55□□□□□ -0.24
TNFRSF9-204ENST00000615230 CHGAP10645 457 aaKnown RBP13.54□□□□□ -0.24
TNFRSF9-204ENST00000615230 CLIP1P30622 1438 aa13.53□□□□□ -0.24
TNFRSF9-204ENST00000615230 ZBTB47Q9UFB7 747 aaPredicted RBP13.52□□□□□ -0.24
TNFRSF9-204ENST00000615230 TOP2AP11388 1531 aaKnown RBP13.51□□□□□ -0.25
TNFRSF9-204ENST00000615230 ARID4BQ4LE39 1312 aaPredicted RBP13.49□□□□□ -0.25
TNFRSF9-204ENST00000615230 FHAD1B1AJZ9 1412 aa13.46□□□□□ -0.25
TNFRSF9-204ENST00000615230 PPP1R15AO75807 674 aaPredicted RBP13.45□□□□□ -0.26
TNFRSF9-204ENST00000615230 ANP32CO43423 234 aa13.45□□□□□ -0.26
TNFRSF9-204ENST00000615230 PLPPR3Q6T4P5 718 aa13.45□□□□□ -0.26
TNFRSF9-204ENST00000615230 KCNH8Q96L42 1107 aa13.45□□□□□ -0.26
TNFRSF9-204ENST00000615230 CADPSQ9ULU8 1353 aa13.45□□□□□ -0.26
TNFRSF9-204ENST00000615230 EIF4G1Q04637 1599 aaKnown RBP13.45□□□□□ -0.26
TNFRSF9-204ENST00000615230 TRHP20396 242 aaPredicted RBP13.44□□□□□ -0.26
TNFRSF9-204ENST00000615230 HDGFP51858 240 aaKnown RBP13.44□□□□□ -0.26
TNFRSF9-204ENST00000615230 CUX2O14529 1486 aa13.44□□□□□ -0.26
TNFRSF9-204ENST00000615230 TONSLQ96HA7 1378 aa13.43□□□□□ -0.26
TNFRSF9-204ENST00000615230 YTHDC1Q96MU7 727 aaKnown RBP13.43□□□□□ -0.26
TNFRSF9-204ENST00000615230 SOGA1O94964 1423 aa13.42□□□□□ -0.26
TNFRSF9-204ENST00000615230 SMARCA4P51532 1647 aa13.41□□□□□ -0.26
TNFRSF9-204ENST00000615230 KANK1Q14678 1352 aa13.41□□□□□ -0.26
TNFRSF9-204ENST00000615230 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.41□□□□□ -0.26
TNFRSF9-204ENST00000615230 CARMIL1Q5VZK9 1371 aa13.4□□□□□ -0.26
TNFRSF9-204ENST00000615230 SLC24A1O60721 1099 aa13.38□□□□□ -0.27
TNFRSF9-204ENST00000615230 ATAD2BQ9ULI0 1458 aa13.38□□□□□ -0.27
TNFRSF9-204ENST00000615230 CFDP1Q9UEE9 299 aaPredicted RBP13.37□□□□□ -0.27
TNFRSF9-204ENST00000615230 CCDC88BA6NC98 1476 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms