Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 CDH18-207ENST00000507958 3542 ntAPPRIS P1 TSL 2 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 ACSL5-201ENST00000354273 3353 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 RNA5SP273-201ENST00000362484 113 ntBASIC8.14□□□□□ -1.11
RC3H1Q5TC82 RNA5SP346-201ENST00000363541 121 ntBASIC8.14□□□□□ -1.11
RC3H1Q5TC82 RNU5F-7P-201ENST00000363696 115 ntBASIC8.14□□□□□ -1.11
RC3H1Q5TC82 SNORA4.1-201ENST00000364263 144 ntBASIC8.14□□□□□ -1.11
RC3H1Q5TC82 SNORA63C-201ENST00000364578 129 ntBASIC8.14□□□□□ -1.11
RC3H1Q5TC82 RNU6-297P-201ENST00000384636 107 ntBASIC8.14□□□□□ -1.11
RC3H1Q5TC82 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 Z68868.1-201ENST00000429048 544 ntBASIC8.14□□□□□ -1.11
RC3H1Q5TC82 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 CCDC11P1-201ENST00000503137 1162 ntBASIC8.14□□□□□ -1.11
RC3H1Q5TC82 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 LECT2-205ENST00000522943 574 ntTSL 3 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 OR5AN2P-201ENST00000534535 896 ntBASIC8.14□□□□□ -1.11
RC3H1Q5TC82 AC090022.1-201ENST00000546569 311 ntBASIC8.14□□□□□ -1.11
RC3H1Q5TC82 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 AP001823.1-201ENST00000604056 1003 ntBASIC8.14□□□□□ -1.11
RC3H1Q5TC82 AC008555.7-201ENST00000605008 583 ntBASIC8.14□□□□□ -1.11
RC3H1Q5TC82 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 ZNF559-ZNF177-202ENST00000446085 2470 ntTSL 5 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 NOS1-206ENST00000618760 12283 ntTSL 5 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 OR10K2-202ENST00000641042 3023 ntAPPRIS P1 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 AC083864.3-202ENST00000570271 1755 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 CD46-201ENST00000322875 3278 ntAPPRIS P4 TSL 1 (best) BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 CD46-207ENST00000367041 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 DPY19L3-202ENST00000392250 5998 ntAPPRIS P1 TSL 5 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 CREM-203ENST00000344351 1625 ntTSL 2 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC8.14□□□□□ -1.11
RC3H1Q5TC82 ZNF474-201ENST00000296600 1964 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 MTND5P1-201ENST00000445440 1375 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 MR1-204ENST00000367580 7704 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AL391422.1-201ENST00000402155 436 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 RNU6-248P-201ENST00000410720 107 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 PIGPP2-201ENST00000411569 458 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AC007435.1-201ENST00000421086 415 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AC239367.2-201ENST00000447309 705 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 HIGD1AP16-201ENST00000450986 258 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 FAM172BP-201ENST00000487497 1089 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AC063943.2-201ENST00000495697 534 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AC108078.1-201ENST00000508073 725 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AC017037.1-201ENST00000508460 471 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 RN7SKP238-201ENST00000516483 249 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AP001893.2-201ENST00000526949 202 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AC068305.2-201ENST00000550567 1205 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 PCMTD1P2-201ENST00000565017 355 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AC010487.1-201ENST00000594408 1172 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AC006006.1-201ENST00000603082 144 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AC005021.1-201ENST00000608730 355 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AC023158.2-201ENST00000614876 543 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AC087821.2-201ENST00000637086 450 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 AC092162.3-201ENST00000624511 1624 ntBASIC8.13□□□□□ -1.11
RC3H1Q5TC82 ZHX3-211ENST00000544979 3933 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC8.13□□□□□ -1.11
RC3H1Q5TC82 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms